Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g01056 ATGGATACCAAAGGCCGACTCATTGCTGGTTCTCACAACAGAAATGAGTTTGTTCTTATCAATGCTGATGAGGTTGCAAGAGTGACTTCTGTGAAGGAGTTGAGTGGGCAAATTTGCCAGATCTGTGGAGATGAGCTAGAAATCACCGTAGATGGAGAGCCATTTGTTGCCTGTAATGAATGTGCGTTTCCAGTTTGTAGACCTTGCTATGAGTATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACCAGATACAAGCGTCTCAAAGGTAGTCCTCGTGTTGAAGGTGATGAAGAAGAAGACGATATCGATGATCTCGAGAATGAATTTGACATTGCTAACAAGGATTCTAATGGTGCATCTGATGCAATGCTCTATCCTCACCTTGCCGTTGGGCGTGGTTCTCATACTAACGGTTCTGGAAATATGGCTTCCGACCTCAACACCTCGTCCGTCCCCACCGATATCCCTCTCCTCACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCATGCTCTAATCATTCCTCCGTTTATTAGCCGTGGGAAAAAAGTCCATCCAGCACCATTCACTGATTCCATGTCTGCTAATCCAAGGCCGATGGATCCGAAAAAGGATTTAGCTGTGTATGGATATGGAACGGTTGCGTGGAAAGAAAGAATGGAGGAATGGCGGAAGAAACAAAATGAAAGGCTTCAAGTAATTAAACACGAGGGTGGAGGTGGAAAAGGTGACGATGAGCTCGATGATACAGATTTGCCTATGATGGATGAAGGGAGGCAACCGCTTTCCAGAAAACTGCCGATCTCCTCGAGCAAGATAAACCCATACAGAATGATAATCGTACTTCGTATTGTCATCCTTTGCCTCTTTTTCCACTATCGTCTCCTTCATCCTGTCAACGAGGCATATGGGCTGTGGTTAACATCAGTAATCTGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTCCCAAAATGGTGCCCGATTGTCCGAGAAACCTACCTTGATCGGTTATCGTTAAGATATGAAAAAGATGGCAAGCCATCTGAGTTGGCTTCTATAGACATATATGTCAGTACTGTGGATCCATTGAAGGAGCCTCCTCTCATCACGGCAAACACCGTCCTGTCTATTCTTGCCGTCGATTATCCAGTAGACAAGGTTTCATGCTACGTTTCGGACGATGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCCGAAACTTCTGAGTTTGCAAGAAAGTGGGTTCCTTTCTGCAAGAAGTTCAATATCGAACCTCGGGCCCCAGAATGGTATTTTGCCCTGAAGGTCGACTATTTGAAAGATAAAGTTGATCCAGCCTTCATCAGGGAACGACGGGCAATGAAGAGGGACTATGAAGAATTTAAAGTTCGAATCAATGGGCTCGTTGCCATGGCTCAAAAAGTTCCTGAAGACGGGTGGACAATGCAGGACGGAACTCCATGGCCCGGGAACAACGTCAGGGATCATCCTGGAATGATTCAGGTATTCCTCGGTTCAAATGGGGTTCGTGATTTGGAGGGAAATGAATTACCTCGTTTAGTGTATGTATCTCGTGAGAAGAGGCCGGGATTCGATCACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTGCGTGTATCGGCAATCATTTCAAACGCTCCATACATTTTGAACGTCGATTGTGATCACTACATCAACAACAGCAAGGCGCTAAGAGAAGCAATGTGCTTCATGATGGACCCGATTTCGGGAAAAAGAATATGCTATGTACAGTTTCCACAAAGATTTGACGGGATTGATAGGCACGATCGATACTCGAATCGCAATGTTGTGTTTTTTGATATCAACATGAAAGGATTGGACGGTATTCAAGGACCGATTTACGTCGGAACGGGATGTGTCTTCAGGAGGCAGGCTCTTTATGGATATGATGCCCCTGCTAAGAAGAAAGCACCAAGAAGGACTTGCAATTGTCTTCCAAAATGGTGCTGCTGCTGCTGTGGAACTAGAACGAAGACTAAACCGAAGACCAGTGATAAAAAGAAGTTAAAAACCAAAGATACGTCGAAACAGATTCATGCACTCGAAAATATCGAGGAAGGAATCGAAGGAATAGATAATGAGAAATCGTCTCTGATGCCCCAAGTTAAGTTCGAGAAGAAGTTCGGGCAATCGCCAGCCTTCATTGCTTCGACACTTATGGAAGACGGTGGCGTGCCCGGAGGAGGGACTTCTGCTTCGTTGTTGAAAGAAGCCATCCATGTAATCAGTTGTGGTTATGAAGATAAATCCGAGTGGGGTAAAGAGGTCGGGTGGATATATGGGTCCGTTACAGAGGATATTTTAACAGGTTTTAAGATGCATTGCCATGGATGGAGATCAGTTTACTGCATTCCTAAAAGGCCAGCGTTCAAGGGTTCGGCTCCTATTAACTTGTCCGATCGTCTACACCAAGTTCTTCGATGGGCTCTCGGGTCTGTTGAAATTCTTTTGAGTAGGCACTGTCCAATATGGTATGGCTATGGATGTGGTTTGAAGTGGCTCGAGCGTTTCTCGTACATAAACTCTGTTGTTTATCCATTGACGTCGGTTCCACTGATTGCGTATTGTACGCTACCAGCTGTCTGCCTGCTTACAGGGCAGTTCATTGTCCCGGAGCTAAGCAATTATGCCAGTATCATCTTCATGGCCCTTTTCATCTCTATAGCAGCAACCGGTATCCTAGAAATGCAGTGGGGAGGCGTCGGGATCCACGATTGGTGGAGAAACGAGCAATTCTGGGTTATCGGTGGTGCATCGTCCCATCTTTTTGCGCTTTTCCAGGGTCTGCTAAAGGTTTTGGCTGGTGTCAACACAAATTTCACGGTCACATCGAAAGGAGGAGACGATGGCGAGTTCGCCGAGCTTTACCTCTTCAAGTGGACGTCGTTATTAGTCCCTCCATTGACGTTACTGATCATAAACATTATCGGAGTTGTCGTCGGAATTTCAGACGCTATCAACAACGGTTACGACTCATGGGGACCACTCATCGGTAAGCTATTCTTTGCATTCTGGGTGATTGTCCATCTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTACCAACCATTATCATTGTATGGTCAATTCTTCTCTCGTCGATTCTATCGCTTTTATGGGTCCGAATCAACCCGTTCCTCGACAAGGGTGGCATTGTCTTGGAAGTTTGCGGGTTAAACTGTGACTAA 3267 45.73 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDELEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDSNGASDAMLYPHLAVGRGSHTNGSGNMASDLNTSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPAPFTDSMSANPRPMDPKKDLAVYGYGTVAWKERMEEWRKKQNERLQVIKHEGGGGKGDDELDDTDLPMMDEGRQPLSRKLPISSSKINPYRMIIVLRIVILCLFFHYRLLHPVNEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDIYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFALKVDYLKDKVDPAFIRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGSNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKAPRRTCNCLPKWCCCCCGTRTKTKPKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSVPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGEFAELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCD 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9352842 9359762 + Carg27431-RA Car09g01056 154793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g01056 1088 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Car09g01056 1088 Coils Coil 99 119 - -
Car09g01056 1088 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Car09g01056 1088 Pfam Cellulose synthase 362 1076 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00961 Car-Chr3:7453357 Car09g01056 Car-Chr9:9352842 0 dispersed
Car07g00766 Car-Chr7:3986767 Car09g01056 Car-Chr9:9352842 0 dispersed
Car09g01056 Car-Chr9:9352842 Car10g00420 Car-Chr10:2110337 0 dispersed
Car01g00819 Car-Chr1:5984072 Car09g01056 Car-Chr9:9352842 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g01056 K10999 - csv:101214061 2103.18