Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g01068 GATACAAAAGATATTTTGTTCATATGTGGTGGAGCGTTCATAGATCTAGAAAAGACAATCTCTGATAGACGGCAAGATTCTTCTATCGGTTTTGGCGCGCCTGTTCGTGCTAACATGAGAATGGGAGGGGTTACGAGCGCTGCTGTTACATCTTCGTTGCTGGAAACGGTTGAGAGTTCTGATCTTATAGCATATGGTCTGATACCAGAGTTTATAGGGCGTTTTCCAATTCTTGTTAGCTTATCAGCCTTGACTGAAGAACAGCTTGTCCAGGTCCTCACTGAACCGAAAAACGCCCTCGGTAAGCAGTACAAGAAGTTGTTTGGCATGAATAACGTGAAGCTGCATTACACAGAGAAAGCACTGAGACTGATTGCCCAGAAATCAATGGCCAAGAACACTGGTGCCAGAGGCTTGAGAGCCATACTGGAAACCGTTCTTGCAGAAGCCATGTATGAGATCCCCGACGTCAAGACTGGAAACGAAAGAGTAGACGCCGTTGTCGTCGACGAAGAATCCGTTGGCTCACTAAATTCAAGAGGCTGCGGAGGCAAAATTCTTCGCGGCGATGGAGCGTTGGAG 582 46.91 DTKDILFICGGAFIDLEKTISDRRQDSSIGFGAPVRANMRMGGVTSAAVTSSLLETVESSDLIAYGLIPEFIGRFPILVSLSALTEEQLVQVLTEPKNALGKQYKKLFGMNNVKLHYTEKALRLIAQKSMAKNTGARGLRAILETVLAEAMYEIPDVKTGNERVDAVVVDEESVGSLNSRGCGGKILRGDGALE 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9611194 9613141 - Carg26417-RA Car09g01068 154805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g01068 194 Pfam C-terminal, D2-small domain, of ClpB protein 84 154 IPR019489 -
Car09g01068 194 Pfam AAA domain (Cdc48 subfamily) 1 77 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g01068 K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX - csv:101217900 349.747
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00811 Car09g01068 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g01068 Car-Chr9:9611194 Car18g01245 Car-Chr18:11859917 6.03E-110 dispersed
Car09g01068 Car-Chr9:9611194 Car09g01070 Car-Chr9:9656142 1.74E-133 proximal
Car01g00811 Car-Chr1:5455679 Car09g01068 Car-Chr9:9611194 3.74E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1785 . . . . . . . . . . Cma01g00888 Cma09g01207 Car01g00811 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g00934 . . . . Car09g01068 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001359 1 5 2 3 1 2 5 2 1 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 3 2 3 4 3 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g01068 Car_Chr09 FPKM 3.734478 1.440322 8.235292 9.345967 2.848234 1.140976 3.029866 12.544093 15.569891 19.987692