Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g01077 ATGGGTTATGATCATTTGGATCAATCTTCAGAACTGAAACTCTATCAGTTTTTTGTGTTCTCTGTTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTATCTTCTTTATCTTCGTCGACGAAGGGCGGATTGGAATTCTATTCGAATGCGAACATCTGATGCAGTGAACAACAATAACATATCTGCTTGTGATGTTGGGTTGAAGAAGGAATTCAGGGAGATGCTTCCTATTATTGTGTTCAATGAAACATTCTTTGTTACTGATACCCTATGTTCAGTCTGTTTAGGGGAATACCAAACAAAAGATAAGCTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTATCCAACCACAGCACCTGCCCACTCTGCCGTCTCTCCGTCCTTTCTCCGTCGTCCCGACCACCGCATATACAGATTGAGATGGGACTCGAATCGACAAATGAACAACGTCGCGAAGAAGCACCTCCTCAACATAATAATCAAGCTTGTCATCATACAACACCTCCTGTGTGA 546 41.39 MGYDHLDQSSELKLYQFFVFSVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNNNISACDVGLKKEFREMLPIIVFNETFFVTDTLCSVCLGEYQTKDKLQKIPSCGHVFHLDCIDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRREEAPPQHNNQACHHTTPPV 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9999877 10001998 - Carg27051-RA Car09g01077 154814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g01077 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 140 IPR013083 -
Car09g01077 181 SMART ring_2 93 134 IPR001841 -
Car09g01077 181 MobiDBLite consensus disorder prediction 157 181 - -
Car09g01077 181 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Car09g01077 181 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 175 - -
Car09g01077 181 Pfam Ring finger domain 93 135 IPR001841 -
Car09g01077 181 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 11 175 - -
Car09g01077 181 SUPERFAMILY RING/U-box 77 146 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00804 Car09g01077 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g01077 Car-Chr9:9999877 Car08g00719 Car-Chr8:4619048 2.97E-20 dispersed
Car20g00591 Car-Chr20:3314203 Car09g01077 Car-Chr9:9999877 1.07E-11 dispersed
Car02g00670 Car-Chr2:5007246 Car09g01077 Car-Chr9:9999877 2.25E-26 transposed
Car01g00804 Car-Chr1:5301655 Car09g01077 Car-Chr9:9999877 1.37E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g01077 K19039 - csv:101219324 264.618