Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g01079 CTTCTCCGTCTCCACTCGTTCGTCACCTCCATCGGTCGCCGCCCTAACATCACCGTCAACCGTTGCTTAACAAACCTCTTCGACCTCAAATTCTCTCCTTCTTCTAAACCCAACAACGGCGTTTCGACTCGCGACATCGTTTTCGACCCCGCTCGCAATCTCTGGTTTCGTCTCTTTGTTCCGTCTTTGGTTTCTGATGATGTTAGTCTACCTGTTGTTGTGTACTTTCACGGCGGCGGGTTTGTGTTTTTTTCTGCTAATTCGATGCCGTACGATGATCTTGGTCGGAGACTTGCACGTGACCTCCGTGTTGTGGTTGTGTCGGTCAATTATCGTCTCTCTCCCGAGCACCGGTGTCCACTTCCCTATGAAGATGGATTTGATGGTTTGAAATTTCTCGATGAAATGGGCTTTGATTCTGTCGTTTTTCCGGCGAAAGCTGATCTTGGTCGGTGTTTTCTCGCCGGAGATAGTGCCGGTGGCAACTTGGCCCACCACGTCGCCGTCAGAGCAGCTGGATATGACTTCAAGAAGGTGGACATCAAAGGCTTGATAGCAATACAACCATTTTTTGGTGGAGAGGAGAGAACAAATTCAGAGGTTCAATTCAGCAAATCCCCAATGTTAAGCTTGGAACAAGCTGATTGGTACTGGAAAGCATTTTTGCCAGATGGGTCCAATAGAAACCACCCAGCTGCACACGTGTTCGGCCCCGATGCCAGAGACCTTCCCGCCGAGAAGTTTCCGACGACGCTGCTAATCGTGGGAGGACGAGACCAGTTACGAGATTGGGGGATGAAGTACTACGAGTGGCTTAAAGAGAGTGATAAAGAAGTGAATTTGGTTGAATATCCAAATGCCATCCATGGATTCTATGCTGTTCCTCAGCTCAAGGATTGTTCTTTGCTCATTAGAGATGTAAATGATTTCATCCAGAAA 939 48.24 LLRLHSFVTSIGRRPNITVNRCLTNLFDLKFSPSSKPNNGVSTRDIVFDPARNLWFRLFVPSLVSDDVSLPVVVYFHGGGFVFFSANSMPYDDLGRRLARDLRVVVVSVNYRLSPEHRCPLPYEDGFDGLKFLDEMGFDSVVFPAKADLGRCFLAGDSAGGNLAHHVAVRAAGYDFKKVDIKGLIAIQPFFGGEERTNSEVQFSKSPMLSLEQADWYWKAFLPDGSNRNHPAAHVFGPDARDLPAEKFPTTLLIVGGRDQLRDWGMKYYEWLKESDKEVNLVEYPNAIHGFYAVPQLKDCSLLIRDVNDFIQK 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10029348 10031898 - Carg27053-RA Car09g01079 154816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g01079 313 Pfam alpha/beta hydrolase fold 73 292 IPR013094 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g01079 - - - csv:101219808 434.876
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00803 Car09g01079 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g01079 Car-Chr9:10029348 Car09g01103 Car-Chr9:11207832 1.13E-102 dispersed
Car11g01332 Car-Chr11:10955604 Car09g01079 Car-Chr9:10029348 1.55E-18 dispersed
Car17g01245 Car-Chr17:9461171 Car09g01079 Car-Chr9:10029348 9.92E-21 dispersed
Car17g01246 Car-Chr17:9461422 Car09g01079 Car-Chr9:10029348 5.41E-61 dispersed
Car18g00958 Car-Chr18:10174168 Car09g01079 Car-Chr9:10029348 9.45E-46 dispersed
Car09g01079 Car-Chr9:10029348 Car01g00803 Car-Chr1:5281109 1.68E-112 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1719 . . . . . . . . . . Cma01g00879 . Car01g00803 . . Cpe06g00949 . . . . . . . . Cla08g00168 . Cec08g0085 Cco08g0229 . Cmu08g0162 Cre08g0149 . . . . . . . Cme09g00114 . . . . . . . . Sed11g1771 Cmo01g00921 Cmo09g01210 . . . Car09g01079 . Cpe02g00985 Bhi06g00124 Tan10g1851 Cmetu09g1418 . . . . . . . . . . . Lsi08g00164 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000161 3 6 3 2 2 10 7 9 9 7 8 9 7 7 10 8 9 1 6 8 8 5 7 8 9 11 7 4 7 3 200
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g01079 Car_Chr09 FPKM 3.762383 3.809489 31.52462 29.12048 9.702538 8.913921 9.657959 30.637941 31.195768 32.267536