Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g01082 ATGGGCTGCGCGCAAGCGAAGCATTCCATGAATTCACCCAATGGGCGAATTCAGACCCTGAAATTGGAAAATGGGTATGTTGGGACTGGGGATTTTAAGGCTCATCGGAGGCCAGCGGCGCAGAGGAGATTTGTGAACAGGGAGGCGTCTGAAGCAGTGAACCCCCACGGTGGTGATGGCGGCGGCGGTAATGGCGGATTAGGTTTGGAGAAGAGTGAGGTGGTGGTGGATGGATGGCCCAAATGGCTTACTAGCAATATTCCTAAGCATGTGTTGGCTGGCTTGGTTCCCAAGAGTGTGGAGGCCTATGACAAGCTTGATAAGGTAGGCCAAGGAAGTTACAGCAATGTGTACAAAGCTCGAGATAGGGAAAGTGGAAAGATTGTTGCCCTTAAGAAGGTCCGTTTTGATACAACAGAGCCTGAGAGTGTGAAGTTCATGGCAAGAGAAATTATGATATTACTGAAATTGGATCACCCCAACATTGTCAAACTTGAAGGATTAGCCACCTCAAGAATGCAGTTCAGTCTTTATCTTGTTTTCGAGTTTATGCAGACTGATTTGGCCCGGGTTATTTCTCGCCCCGGAGTACGGCTTACGGAGCCTCAGGTCAAATGTTATATGCATCAGCTACTCTCTGGTCTGAAGCATTGCCACGATAAGGGGATACTACACCGTGATATCAAAGGATCGAACCTGTATCGAGCTCCGGAGCTATTGTTAGGTTCTACAGATTATGGAGTCGGCATTGATCTATGGAGTGCTGGATGCCTCTTGGCCGAAATGTTCACGGGAAGGCCGATTCTGCCCGGTCGAACAGAGGTTGAACAACTCCACAAAATTTTCAAGGTATGTGGAACACCATCTGAGGAATATTGGAGAAAACTCAAGCTATCACCGAGTTTCAAGCCTCCGCAGTTGTATCGACCTAGTCTCCGAGAATCGTTTAAGCATCTGCCGTCCTCGTCTTTAGGCCTCTTAAGCACTCTACTTGCTTTGGAGCCTTCATATCGCGGTTCTGCGTCGTTAGCTCTCGAGAATGAATTCTTTTACACAAGCCCATTGGCATGTGATGTTTCGGGTCTTCCTGTTATCCATAGTGAGCCCGATGAACCGAATCAAACGAATCAGCCGAAGTGCAAGAATTCTAAAGTGACAAGGCGTTCTTCTACACACCAAGGGCGTCGGAGGAAAGATTTAGCTGCTGAAAAACCAAAAGAAGAGTCGAACATTCGCAAACAGCTTTCACAGCAAATGGTCGATGCTGACGAACAAAGCGAAGATCGAGGGAGTACTACAACGAGCACCTCCTCGAGTGCTAACATGGGAGGAGGGCAAAAGGGGAGTACTACGACGAGCACCTCCTCAAGCGTTAACAGGGGAGGATCAGGAAAGGGGAGCTCTAACTTCTTGCCATCTCCAACCACATCTAATAAGAAACCGTCACGAACGGAAGGCCATCTTGAGGCTACCAACAACCTCAATTTGCCCCCATTACCAAAGTCGAGAAGATACTCAACCTTTAACATCGAAGACCGTGATATGCATATCTCTGGTCGGATTCGGAGGTCGGTCTCAACCAGAGATTTCAGGAATTTGGCGCGAAAAGAGCATTTGAAATTATATGCTGTTGATGATTAG 1641 47.84 MGCAQAKHSMNSPNGRIQTLKLENGYVGTGDFKAHRRPAAQRRFVNREASEAVNPHGGDGGGGNGGLGLEKSEVVVDGWPKWLTSNIPKHVLAGLVPKSVEAYDKLDKVGQGSYSNVYKARDRESGKIVALKKVRFDTTEPESVKFMAREIMILLKLDHPNIVKLEGLATSRMQFSLYLVFEFMQTDLARVISRPGVRLTEPQVKCYMHQLLSGLKHCHDKGILHRDIKGSNLYRAPELLLGSTDYGVGIDLWSAGCLLAEMFTGRPILPGRTEVEQLHKIFKVCGTPSEEYWRKLKLSPSFKPPQLYRPSLRESFKHLPSSSLGLLSTLLALEPSYRGSASLALENEFFYTSPLACDVSGLPVIHSEPDEPNQTNQPKCKNSKVTRRSSTHQGRRRKDLAAEKPKEESNIRKQLSQQMVDADEQSEDRGSTTTSTSSSANMGGGQKGSTTTSTSSSVNRGGSGKGSSNFLPSPTTSNKKPSRTEGHLEATNNLNLPPLPKSRRYSTFNIEDRDMHISGRIRRSVSTRDFRNLARKEHLKLYAVDD 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10127893 10132934 - Carg27056-RA Car09g01082 154819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g01082 546 ProSiteProfiles Protein kinase domain profile. 103 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g01082 546 MobiDBLite consensus disorder prediction 366 502 - -
Car09g01082 546 MobiDBLite consensus disorder prediction 45 67 - -
Car09g01082 546 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Car09g01082 546 MobiDBLite consensus disorder prediction 395 411 - -
Car09g01082 546 MobiDBLite consensus disorder prediction 429 502 - -
Car09g01082 546 Pfam Protein kinase domain 103 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car09g01082 546 MobiDBLite consensus disorder prediction 369 384 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g01082 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - csv:101209601 804.283
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00780 Car09g01082 CCT
Car01g00780 Car09g01082 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g01082 Car-Chr9:10127893 Car14g01474 Car-Chr14:12256152 1.92E-128 dispersed
Car09g01082 Car-Chr9:10127893 Car16g00361 Car-Chr16:2244419 7.14E-128 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1343 Blo01g01738 . . . . . . Bma01g02517 . . . Cma09g01247 Car01g00780 . . . . Bhi04g02165 . . . . . . Cla08g00325 Cam08g0756 Cec08g0290 . Clacu08g0468 . . Cone4ag1474 . . . . . . Cme03g00895 . . Bda11g00865 . . . . . . . Cmo09g01213 . . . Car09g01082 . . . . . . . . . . . . . . . . Lsi08g00253 . Chy03g00280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002491 3 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 0 1 2 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89105 PF00069 Pkinase 1.20E-33 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g01082 Car_Chr09 FPKM 14.619605 16.464699 23.546913 23.687889 13.165301 12.499939 11.670793 36.131725 34.404644 31.758537