Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g01099 ATGTGTGTATCTTTTGAACGTCCCATATTTCCTGATTTTTCTCTGAATCCGTACTCTTTTACATCCATGCAGAACGATTTGCTTCAGCTATTCCAGCCATTTGGTGTCATAACCAAGCTTGTGATGCTTCGTGCTAAAAATCAGGCTCTTATCCAGATGCAAGATGTTCCCTCAGCAGTTAATGCTTTGCAGTTCTTTGCAAATGTTCAACCTAGCATTAGAGGCGCTGGACGTGGCAAGCTTGTCTTTCCTAGAGAACGGATCTTAGATTCTGGTCCCACCATCCTTCTAAGGGGGAGGAATGTTTATGTCCAGTTTTCATCACATCAAGAACTTACTACTGCTGATCAGAATGCTCAAGGACGAGGAGATGAGCCAAATCGAATACTCTTAGTCACAATCCATCACATGCTATATCCCATTACAGTGGAAGTGCTGCATCAAGTGTTTTTCCCACATGGATTTGTGGAGAAGATCGTGACATTTCAGAAGTCAGCTGGTTTTCAGGCTCTCATTCAGTATCAAACTCGCCAATGTGCTATTTCCGCTAGGACTGCACTACAGGGGCGCAATATATATGATGGTTGCTGTCAGCTTGACATTCAGTTCTCCAATCTTGACGAGTTACAGGTGAACTACAACAATGAACGTTCAAGGGATTTCACAAATCCTAGCCTGCCTTCTGAACCAAAAGGCCGGTCATCTCAACAGCCTGGATATGGTGATGCGGGAGGCATGTATGCACTTCAAGCATCTGGAGCAGGACCAGTTGGTTTTCCACAGATGGCCAATGCGGCTGCTGTTGCTGCTGCATTTGGAGGAGGTTTGCCACCTGGTGTTAGCGGGACTAACGACAGGTGTACAGTCCTCGTGTCCAATCTGAATCCTGATAGAATAGATGAAGACAAGCTTTTTAACCTTTTCTCCATATACGGTAACATTGCAAGAATTAAGCTTCTCCGGAATAAACCTGATCATGCACTCGTTCAGATGGGAGATGGGTTCCAGGCAGAATTAGCTGTGCACTTTTTGAAGGGAGCAATGTTGTTTGGCAAAAGATTGGAGGTCAACTTCTCAAAGCATCCTAACATTACACAAGGGGCTGACACTCATGAATATGCTAACTCAAATCTTAATCGTTTTAACCGAAATGCTGCAAAGAACTACCGCTACTGCTGCTCCCCAACAAAGATGATTCACATCTCATCGTTATCCCAGGAAGTGACTGAAGAAGAAATAGTGAATCTCCTCGAGGAGCACGGGCCGATCATCAACACCAAGCTCTTTGAGATGAACGGGAAGAAACAGGCACTCATCATGTTTGACACTGAAGAGCAGGCCACTGAAGCTCTTGTTTGCAAGCACGCTAGTTCGCTTAGTGGGTCGATCATTCGCATTTCGTTTTCCCAGCTGCAGAGTATATGA 1425 44.91 MCVSFERPIFPDFSLNPYSFTSMQNDLLQLFQPFGVITKLVMLRAKNQALIQMQDVPSAVNALQFFANVQPSIRGAGRGKLVFPRERILDSGPTILLRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCAISARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPSLPSEPKGRSSQQPGYGDAGGMYALQASGAGPVGFPQMANAAAVAAAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIARIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVNLLEEHGPIINTKLFEMNGKKQALIMFDTEEQATEALVCKHASSLSGSIIRISFSQLQSI 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11161171 11169712 + Carg24108-RA Car09g01099 154836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g01099 474 Pfam RRM-like domain 125 204 IPR021790 -
Car09g01099 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 374 - -
Car09g01099 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 68 - -
Car09g01099 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 397 471 IPR000504 GO:0003723
Car09g01099 474 MobiDBLite consensus disorder prediction 217 235 - -
Car09g01099 474 MobiDBLite consensus disorder prediction 217 240 - -
Car09g01099 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 401 462 IPR000504 GO:0003723
Car09g01099 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 361 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g01099 K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2 - csv:101210828 796.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00914 Car-Chr2:6481437 Car09g01099 Car-Chr9:11161171 1.48E-06 dispersed
Car09g01099 Car-Chr9:11161171 Car15g00968 Car-Chr15:7137933 2.38E-25 dispersed
Car01g00828 Car-Chr1:6346212 Car09g01099 Car-Chr9:11161171 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1264 . . . . . Bpe04g00384 Bma04g00395 . . . . Cma09g01285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00827 . . . . . . . Car09g01099 . . . . . . . . . . . . . . . . . . Chy03g00283 Cme01g00709
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004715 2 1 2 2 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g01099 Car_Chr09 FPKM 44.257893 49.507584 0.428613 0.464389 0.069848 0.0 0.019087 0.987148 0.937114 0.581015