Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g01103 ATGCAGCCGTTCAGTGTTTCGTCGGAGATTTCCACCTCCCAACTTCCATGGAAGCACCGCCTTACTCTCCGATTCGCCGCCCTACTCTTCAACGCTTCTATCCGATCAGATCTCACCGTTAATCGCCGGCTTCTCAATTTCCTCGACCCCAAAATCCCTCCCAATCCCAATTCAATCCACGCCGTTTCCTCTTCCGATCTCACAATCGACGACTCTCGTGACCTCTTCCTCCGAATCTTCACCCCCACCGTCGCCGCCACGGACTCAGTCCTGCCGCCGGTAATTTTCTACTTTCACGGCGGCGGTTTCGCCTTCGGTTCTGCCGCCGCCACGTCAATGGACATGGCCGCCCGCCGTTTCAGTAAGGAACTCGGAGCTGTCGTAATCTCCGTGAATTACCGTCTCGCTCCTCAGTTCCGATTCCCTTGCCAATACGACGACGGATTTGACGCCGTGAAATTCATCGACGAAATGGACGACGACGATCCATTGTTGGGTAAGGCAGATCTGAGCCGTTGCTTTATTTTGGGGGAAAGCGCCGGGGGGAATCTAGGGCACCACGTGGCAGTGAGAGCGAGCGAGTACGCTTTTAAGAGAGTGAAGGTAATTGGGTTTATAGCGTCGCAGCCGTTTTTCGGCGGAGAGGAGAGAACAGAGTCGGAGATTCGGCTCTGTAATCAGCCTCCGTTAACTCTGAAACTTGCGGATTGGTTCTGGAAGGCGTTTTTGCCGGCGGGGGAAGACCGGGATCACGCGGCGGCGAATGTGAATGGACCGAACGGAAGGGATGTCTCCGGACTGAGAAATTTTCCGGCGACGATTATTTTGGCCGGAGGATTGGATATTCTGATAGATCGGCAGAGGAGGTACTACGAGGAGCTGAAGAGAATGGGAAAGGAGGTGAAATTGGTGGTGTTTACGAACGGCGTCCATGGATTCTTTAGCTTTGAGGATCTGCCGGAATATTCTCTAATGATTAAGGAAATGAGGGATTTCATTGCAATGTTTCACCGGAATATTCTTTAA 1026 52.63 MQPFSVSSEISTSQLPWKHRLTLRFAALLFNASIRSDLTVNRRLLNFLDPKIPPNPNSIHAVSSSDLTIDDSRDLFLRIFTPTVAATDSVLPPVIFYFHGGGFAFGSAAATSMDMAARRFSKELGAVVISVNYRLAPQFRFPCQYDDGFDAVKFIDEMDDDDPLLGKADLSRCFILGESAGGNLGHHVAVRASEYAFKRVKVIGFIASQPFFGGEERTESEIRLCNQPPLTLKLADWFWKAFLPAGEDRDHAAANVNGPNGRDVSGLRNFPATIILAGGLDILIDRQRRYYEELKRMGKEVKLVVFTNGVHGFFSFEDLPEYSLMIKEMRDFIAMFHRNIL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11207832 11208857 - Carg24112-RA Car09g01103 154840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car09g01103 341 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 95 111 IPR002168 GO:0016787
Car09g01103 341 Pfam alpha/beta hydrolase fold 95 314 IPR013094 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g01103 - - - csv:101202912 533.872
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00265 Car-Chr8:1665245 Car09g01103 Car-Chr9:11207832 3.91E-107 dispersed
Car09g01079 Car-Chr9:10029348 Car09g01103 Car-Chr9:11207832 1.13E-102 dispersed
Car09g01103 Car-Chr9:11207832 Car10g00960 Car-Chr10:8732848 5.29E-72 dispersed
Car04g02905 Car-Chr4:21866548 Car09g01103 Car-Chr9:11207832 2.63E-111 transposed
Car01g00803 Car-Chr1:5281109 Car09g01103 Car-Chr9:11207832 4.88E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1718 . . . Bda03g00361 . Bpe04g00321 Bma04g00338 . . . . Cma09g01288 . . . Cpe06g00972 . . . . . . . . Cla08g00161 . Cec08g0097 Cco08g0221 . Cmu08g0153 Cre08g0140 . . . . . . . Cme09g00112 . . . . . . . . Sed10g1646 . Cmo09g01246 . . . Car09g01103 . . Bhi06g00128 Tan10g1852 Cmetu11g1682 . . . . Cla11g00796 Cam11g0832 Cec11g0818 Cco11g0820 Clacu11g1028 Cmu11g0889 . Lsi08g00162 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000161 3 6 3 2 2 10 7 9 9 7 8 9 7 7 10 8 9 1 6 8 8 5 7 8 9 11 7 4 7 3 200
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car09g01103 Car_Chr09 FPKM 22.423492 23.182398 27.138439 31.190977 25.531858 22.543232 28.44611 36.800945 37.945786 39.722633