Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g01125 ATGGCCGAACCCACTTACACCGGCGTCCGTAAACGCAAATGGGGCAAATGGGTCTCCGAAATCCGCCAACCCGGCAAAAAAACCCGCATCTGGCTCGGCAGCTACCACCTTCCCCAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCCACCTCCGCGGCCCCAACGCCCGCCTCAACTTCCCCGACCTCATCGACTCCTTCCCCCGCCCCGCCACCTCCTCTCCCGACGACATTCAGGCCGCTGCCCACATGGCTGCATTGCGCCTCGCCAACACCAAGCCGCCGCCTGCTGCTCAACACCCACCGGCGCCGGTTCGAATCGGGCTGTCTCCGAGCCAAATTCAGGCCATTAATGAGTCGCCGTTGGATTCTCCGACGATGTGGATGCAGATGGCGGCGGAGGCGCTTTGTTTAGAGGATTATTTGTGCGATGGATTTGATGTGGAAGATAATTCCATTTGGGATTATTCTTCACTCTAA 483 60.04 MAEPTYTGVRKRKWGKWVSEIRQPGKKTRIWLGSYHLPQMAAAAYDVAALHLRGPNARLNFPDLIDSFPRPATSSPDDIQAAAHMAALRLANTKPPPAAQHPPAPVRIGLSPSQIQAINESPLDSPTMWMQMAAEALCLEDYLCDGFDVEDNSIWDYSSL 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11729544 11730026 - Carg27907-RA Car09g01125 154862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g01125 160 ProSiteProfiles AP2/ERF domain profile. 5 62 IPR001471 GO:0003700|GO:0006355
Car09g01125 160 Pfam AP2 domain 5 54 IPR001471 GO:0003700|GO:0006355
Car09g01125 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 5 156 - -
Car09g01125 160 Gene3D AP2/ERF domain 5 63 IPR036955 GO:0003700|GO:0006355
Car09g01125 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 156 - -
Car09g01125 160 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Car09g01125 160 SUPERFAMILY DNA-binding domain 5 63 IPR016177 GO:0003677
Car09g01125 160 PRINTS Ethylene responsive element binding protein signature 6 17 IPR001471 GO:0003700|GO:0006355
Car09g01125 160 PRINTS Ethylene responsive element binding protein signature 44 64 IPR001471 GO:0003700|GO:0006355
Car09g01125 160 SMART rav1_2 5 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00785 Car-Chr1:5099026 Car09g01125 Car-Chr9:11729544 1.40E-61 dispersed
Car09g01125 Car-Chr9:11729544 Car05g01271 Car-Chr5:11800091 7.27E-33 dispersed
Car09g01125 Car-Chr9:11729544 Car09g01127 Car-Chr9:11766705 3.71E-53 proximal
Car01g00784 Car-Chr1:5082921 Car09g01125 Car-Chr9:11729544 9.55E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4113 PF00847 AP2 2.00E-11 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g01125 - - csv:101207003 238.039