Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car09g01127 | ATGGGAGATCCTAGCTCAACGGGCAGCCACGGCGCAGCGACGTCGAGCTACCGAGGCGTTCGCAAGAGGAAATGGGGCAAATGGGTGTCGGAGATTCGCGAGCCAGGAAAGAAGACGAGAATTTGGTTAGGGAGTTTCGAGACACCGGAGATGGCGGCGGCGGCTTACGATGCTGCTGCCTATCACTTCCGCGGTCATGATGCTCGTCTCAACTTCCCACATCTTGCCAACTCTCTCCCCTTCCCTAATGGCTCCACTCCTGATGATATCCGTTTCGCTGCCCATAGAGCAGCATTGCGAGTACGAACAACACCAGGTGTTGCGGCGGAGGGTGATCGGAGTTCCACGTCGAGTGTTGCACCGGTCACTGTTCGACTATCGCCGAGCCAAATTCAGGCGATTAACGAGTCGCCATTGGACTCGCCGAAGATGTGGATGGAAATGTCGTCGGAGTTTTCGAATGGGACTGTGTTTGTTGATGAGATGGAGGATGCGATGTGGGAGAATATGCATAATGATTCATTGTGGGATCCTTAG | 537 | 54.38 | MGDPSSTGSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDAAAYHFRGHDARLNFPHLANSLPFPNGSTPDDIRFAAHRAALRVRTTPGVAAEGDRSSTSSVAPVTVRLSPSQIQAINESPLDSPKMWMEMSSEFSNGTVFVDEMEDAMWENMHNDSLWDP | 178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 11766705 | 11767241 | - | Carg27905-RA | Car09g01127 | 154864 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car09g01127 | 178 | Pfam | AP2 domain | 16 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Car09g01127 | 178 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Car09g01127 | 178 | ProSiteProfiles | AP2/ERF domain profile. | 16 | 73 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car01g00784 | Car-Chr1:5082921 | Car09g01127 | Car-Chr9:11766705 | 3.06E-83 | dispersed | |
Car09g01127 | Car-Chr9:11766705 | Car16g01062 | Car-Chr16:9136091 | 1.51E-31 | dispersed | |
Car09g01125 | Car-Chr9:11729544 | Car09g01127 | Car-Chr9:11766705 | 3.71E-53 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4114 | PF00847 | AP2 | 5.90E-14 | CL0081 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car09g01127 | - | - | csv:101207243 | 292.352 |