Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car09g01147 | ATGGCTCGTGGGAAGGTTCAATTGAAGAGGATTGAGAACCCTGTGCACAGGCAAGTGACGTTCTGCAAGCGCCGAGCTGGGCTCCTTAAGAAGGCTAAGGAGCTGTCTGTGTTGTGCGATGCTGAAATTGGAGTCTTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAACCACACCAATGGGAGTCAGCCACCAGAGCCACCAATGGACAACCAAACCCTGGAAGTAAAGGAGGAGGTCAACAGGCTGAAACAAGAAATTGAAGTCCTAAAGGGTCTCAGGAATGCTTTAGGAGGAGGAGGAGTGGAAGGAATAAGGACATTGGATGAGCTTGATATGCTTGAGAAGCAACTTGAGATTTGGATATGTCAAGTGCGTTCTACAAAGATGAAGTTCATGTGTGAAGAGATTGATGCATTGAGGAACCAGGAACTCATACTGAAAGCTGCCAACAAGTATCTTCACGATAAGATGGAGGAAAACATTTGCAACACAACTAACATTGAAGCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA | 621 | 44.28 | MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELATKGTMQGLIERYMNHTNGSQPPEPPMDNQTLEVKEEVNRLKQEIEVLKGLRNALGGGGVEGIRTLDELDMLEKQLEIWICQVRSTKMKFMCEEIDALRNQELILKAANKYLHDKMEENICNTTNIEAVNITNCQYPLTIQDELFQLCT | 206 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 11972960 | 11979451 | - | Carg27640-RA | Car09g01147 | 154884 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car09g01147 | 206 | Coils | Coil | 88 | 108 | - | - | |
| Car09g01147 | 206 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
| Car09g01147 | 206 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 56 | IPR002100 | GO:0003677|GO:0046983 | |
| Car09g01147 | 206 | Pfam | K-box region | 87 | 173 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
| Car09g01147 | 206 | ProSiteProfiles | K-box domain profile. | 88 | 179 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car09g01147 | Car-Chr9:11972960 | Car14g01026 | Car-Chr14:8791655 | 6.90E-38 | dispersed | |
| Car09g01147 | Car-Chr9:11972960 | Car14g01800 | Car-Chr14:14086186 | 1.19E-40 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4115 | PF01486 | K-box | 1.50E-17 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car09g01147 | - | - | csv:105435626 | 375.17 |