Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g01159 ATGAGGATTGGCTTCCACTGTGGAAAAAGAGCGAGAGGAGGAACAATCTGGTCCCTTCGTAGCGGCGGCGGCGGTAGCGGCGGCGGACTTGCTCGCTTCCGCTCTGCTCCGGCTGCCTGGTTGGAAGCGCTTTTGGAGGACGAGAAGAGGACCTACTCAGGCCTAAATCAGTGCTTGACTCAGCTTCTCGCTGGCAACTCCTCCGACCTAGACTCCCCCGCGGATCAGGCCTTAGGCAAAATAGCTCTCCGGCTGAGTTTCTCGGCGCCTCCGGAATCGGGGAAGGATTTTACTCTTCCTATGCTATCAAGATTCCTCGGCCGCTCTCGAGATCTCTCCACTTCCAAGCGGGGGAGAGAAGTCGACGCTCAGAACTTCCCGCCTAAATTTCGCCGCAGCTGGGAAGGAAGTGGAGTATCGAGTTTGATAGACATGGAAATGGAGAAGTTATTGGAGGACTCCGTGCCCTGCCGTGTGAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCTGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGCAAACAAACACTGCAGATATGTTGGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAGATTCAGGAACTCACCGAGCATCAGCGCAGGTGCACGTGCACGGTTAAGGAATAA 708 54.1 MRIGFHCGKRARGGTIWSLRSGGGGSGGGLARFRSAPAAWLEALLEDEKRTYSGLNQCLTQLLAGNSSDLDSPADQALGKIALRLSFSAPPESGKDFTLPMLSRFLGRSRDLSTSKRGREVDAQNFPPKFRRSWEGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELTEHQRRCTCTVKE 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12204739 12211172 - Carg27182-RA Car09g01159 154896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g01159 235 Pfam Helix-loop-helix DNA-binding domain 170 216 IPR011598 GO:0046983
Car09g01159 235 Coils Coil 205 225 - -
Car09g01159 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 215 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g01159 Car-Chr9:12204739 Car11g00718 Car-Chr11:4107852 2.76E-40 dispersed
Car09g01159 Car-Chr9:12204739 Car09g01160 Car-Chr9:12265755 1.84E-67 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4117 PF00010 HLH 2.80E-10 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g01159 - - csv:101209773 266.544