Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car09g01162 ATGTCTCGAAGATCGACTAGGTTAGCAGAAAATGCAAATGAAAATTTGAAGAAAACAATAAATAGTGAAGCTGCAACATCATCTGGAACTAAGAGATATGGTGTATCTGGGGGAAGCCATAAATCTTCTAGAGGGAGGCCGAAGTTGAAGCGGGATAGTGAAATCAAGCTAAATGAAGTTACGTTTCCTCCTTTATCTTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACTTGCAGAAAAAGCTCAGTGGTCACAAGAGCAACTGCTTCAAAGAACTTCAAGTCTGAACGGATCAAAAAAGGGGACGGGAGATCAAGGAAGAGGGTGTATTATCAGAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGATGATGTTTATGTGAGAAGGAGAGAAGATGCAAGCTCCGACAATGAAGACCCCGAAGTTGAGGAGTGTAGAGTGTGCTTTAAGTCTGGAAAGGCTATAATGATCGAATGTGATGATTGTCTTGGTGGTTTTCATTTGAAGTGTTTGGAGCCGCCCATGAAGGAAATCCCTGATGGTGATTGGATTTGTGGGTTTTGTGAGGCTACTAAAATGGGCAAAGAGGTTCAATTACCAAAGCCTCCGGCAGGTAAAAAACGGGTTAGGACAATGAGGGAGAAGCTTCTGGCAGGTGACTTGTGGGCTGCCCAAATTGAAAGTTTATGGAAAGAAGTAAATGGCAGCCATCACTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACAGCAGCTGGAAGGCAATCACATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTACGCAGATATTGAGATGGAATCGCTTCTTAGACAGTGTCAAGTCATGAATCCTAAAGACTACTATAATGCCAAGGAAGGGGATGATATATTTTTATGTGAGTATGAATATGACGTTCGTTGGCATAGTTTCAAGCGGTTAGCTGAAATTAATAAAGAAGAGGATGGTGAAGCAGTTGATAGTGACAAAGACTGGAAGTTGGAACAGAATGTAGACTCTGATTCAGATGGTGATGTGGAATATGAAGAAGAGAGAGCAAAAATTTTACAATCTCGAAACTACCCAAGCTCTACCCACGAATTGGCTGCAAATTCAAGGAAAGGACAATTTTGTGGACTACAAAAGATAGGAGCAAAGAAGATCCCCGAGCATATAAGATGCCACAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCATTACCCAAGTCTCTACCTTGTAGGAATAAAGAAATTGAGGAGATAACTACATTTATAGAAAGTGCTATATGTGGTGATCAATGTTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTCCTGTCAGTAATGAGAAACTTGCGGGCTAAAGTTGATGCCGGAAATATAAGGCCTCATTGCTTTGTAGAGGTCAATGGTCTAAAGCTGGCAGCACCAGAAAATATATACAGGGTTATACATGAAGCATTAACTGGGCATAGGGTTCATTGGAAAAAAGCGCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAATAATTGCAAAGGGGATGAACGAACTTGCATTCTTCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCTGTTTTATACAACATTCTTGACTGGCCGACAAAGCCACAAGGAAAGTTAATTGTGATAGGTATTGCAAATACCATGGACCTTCCTGAGAAGTTGCTTCCTCGAATTTCTAGCCGAATGGGTATTGAAAGGCTTTGTTTTGGCCCTTATAATTATCAGCAACTTCAAGAAATAATTTTGAGCCGCCTCGAAGGAATCGATGCATTTGAGAAACAAGCTATTGAATTTGCATCAAGAAAGGTAGCTGCCATTTCAGGAGATGCACGTCGAGCTCTGGAGATATGTAGGCGTGCAGCTGAAATTACAGATTATCGTATAAAGAAGAGTTTGACTTCCAACACTAGTATGAATGCGAAAACACATGTAGGAATAGCTGAGGTGGAAGCAGCGATTCATGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCAGAGCAAGATCTTTTTGACAGCTATGGTGCACGAACTTTATAAAACTGGAATGGGTGAAGCAACCTTTGAAAAGCTTGCCATGACTGTCTCATATCTCTGTACAAGCAATGGAGAGGAATTTCCTGGATATGATGCTCTCTTGAAAGTTGGGTAA 2250 40.76 MSRRSTRLAENANENLKKTINSEAATSSGTKRYGVSGGSHKSSRGRPKLKRDSEIKLNEVTFPPLSFEQLEGKKRKTCRKSSVVTRATASKNFKSERIKKGDGRSRKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDNEDPEVEECRVCFKSGKAIMIECDDCLGGFHLKCLEPPMKEIPDGDWICGFCEATKMGKEVQLPKPPAGKKRVRTMREKLLAGDLWAAQIESLWKEVNGSHHCKVRWYIIPEETAAGRQSHNLKRELYLTNDYADIEMESLLRQCQVMNPKDYYNAKEGDDIFLCEYEYDVRWHSFKRLAEINKEEDGEAVDSDKDWKLEQNVDSDSDGDVEYEEERAKILQSRNYPSSTHELAANSRKGQFCGLQKIGAKKIPEHIRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESAICGDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGNIRPHCFVEVNGLKLAAPENIYRVIHEALTGHRVHWKKALQLLTKRFSDVNNCKGDERTCILLIDELDLLVTRNQSVLYNILDWPTKPQGKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIILSRLEGIDAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYRIKKSLTSNTSMNAKTHVGIAEVEAAIHEMFQAPHIQVMKSCSKQSKIFLTAMVHELYKTGMGEATFEKLAMTVSYLCTSNGEEFPGYDALLKVG 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12340130 12363542 - Carg27728-RA Car09g01162 154899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car09g01162 749 ProSiteProfiles Zinc finger PHD-type profile. 144 193 IPR019787 -
Car09g01162 749 MobiDBLite consensus disorder prediction 1 37 - -
Car09g01162 749 Pfam BAH domain 226 315 IPR001025 GO:0003682
Car09g01162 749 Pfam AAA lid domain 620 653 IPR041083 -
Car09g01162 749 MobiDBLite consensus disorder prediction 328 350 - -
Car09g01162 749 ProSiteProfiles BAH domain profile. 202 318 IPR001025 GO:0003682
Car09g01162 749 MobiDBLite consensus disorder prediction 328 343 - -
Car09g01162 749 SMART AAA_5 443 596 IPR003593 -
Car09g01162 749 ProSitePatterns Zinc finger PHD-type signature. 147 190 IPR019786 -
Car09g01162 749 MobiDBLite consensus disorder prediction 1 53 - -
Car09g01162 749 CDD AAA 424 599 - -
Car09g01162 749 Pfam PHD-finger 147 191 IPR019787 -
Car09g01162 749 Pfam ATPase family associated with various cellular activities (AAA) 448 593 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g01162 Car-Chr9:12340130 Car20g00308 Car-Chr20:1786895 1.80E-30 dispersed
Car09g01162 Car-Chr9:12340130 Car07g00024 Car-Chr7:150612 1.24E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4118 PF00004 AAA 5.10E-19 CL0023 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car09g01162 K02603 - csv:101214082 1291.56