Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00005 ATGAAGGCGAAGGAGTTGTGTTTTAGGTTGCTGTATCGGTGCCGGAGGGGTAAGCTGAAGATGTTGCAGAAGCAGAGATACTCGGAGCGCCAAAGGATTACTTCCGCCCTTCTTGCTACCTCTGCCTATGCTTTACCAGGCCCCCTTCGAATTCCAAGGGTTCCACTTTCTTCACTCCTTCCTTTCACCTCTTCTCCCATACATGTACACTATACCTCTTGCGCTTCTCTTCCCAATCCTCTCCCACTCCTCAATTTCATGTCAATTCGCTGCATTTGTTTTCTGCCTCCGTCTCCTCCCTCTTCCATTCCCTGGAATTCTAATGAACTTGAGGACGCAAATTCTATTTCTAAGTTCACCGTAGAAGCAGGTTATCAAACCCTTTATCGTGTTCTTGAAGCCTGCAGACTCTCCCCCTCGAATTCCAAAACCGCTTCTGAAACGCATGCAAGAATGATTAAATTTGGATATGGAAACTACCCAACTCTCGTCACCTCTCTAGTATCAGCTTATCAACGTGCCGATTGCCTTAATCGGGTCCATCAACTTCTTAATCTACTCTGCTCTAAACATCTTGATTTAGTTGCAATGAACTTATTTATTGACAATTTTATGAAAATAGGGGAATGCAAACTTGCTAAAAGGGTGTTTGATAAAATGCCTTACCGTGATGTGGTAACGTGGAACTCAATCATCGGAGGTTGTGTGAAGAATGCACGGTATGAGGAGGCATTTAAATTCTTTAGGCAGATGCTGAACTCAAATATCCAGCCGGATGGGTTTACATTTGCTTCCGTGTTGAATGCATGTGCGCAGCTCGGAGCTCCAAGTATCACTCAGTGGGTTCATGCTCTGATGACTCAGAAAAAAATTGAGCTTAATTCTATATTGAGTTGTGCACTCATAGACGCCTACTCAAAGTGTGGCAGCATCCAAATTGCAAGGGAAATCTTTAGCAGCGTCCCTCGCAGTAACATCTCAGTTTGGAATGCGATGATCAAAGGGCTTGCGATTCATGGGCTTTCAATGGATGCATTATCGGTATTCTGGATGATGGAGCGTGAGAATGTTCTGCCTGATGCTGTCACCTTTTTGGGTATCTTAACAGCCTGCAACCATGGTGGCTTAATTGAACAGGGTCGCAGGTTTTTTGATTGGATGAAAAACCGTTATTCAATTCAGCCACAGCTCGAACATTATGGAGTCATGGTTGATCTGTATAGCCGAGCTGGGTTTCTCGAGGAGGCCTATTCCATAATCGTAGCAATGCCCATAGAGGCAGATGTTGTGACATGGAGGGCGCTTCTGAGTGGTTGTAGAATTTACAGAAATCAAGAACTCGCAGAAGTTGCTATTGCAAACATGTCTCATCGTGGGAGTGGAGATTACGTGTTGCTATCAAATATCTATTGTTCTCTCAACAGATGGGAGCATGCAGAGAGAGTTAGAGAGAGGATGAAAAGCAATGGAGTTCGCAAGAGTTGCGGAAAAAGCTGGATTGAGTTGGGAGGTTCCATTCAAAGCTTCAAGTCAGGTGACCGATCGCATCCAGAAAGCGATGCAGTGTACAAGGTGGTGTGGCGTTTGATGAAGAGAAGTCGGTCAGAGGGATATATGCCTGTGACAGACTTGGTTCTCATGGATATCTCTGAGGAGGAGAAGGAAGAGAACTTATCATATCACAGCGAAAAGTTGGCATTGGCGTATGCGATCCTGAAAACTAGTCCAGGGGCAAAAATCAGTATATCAAAGAACCTACGGATGTGTGATGATTGTCATAGATGGATAAAACTAGTTTCAACACTGCTGTGCAGAGTTGTAGTAGTGAGAGATCGGATCCGGTTTCATCAATTCGAAGGTGGCATGTGTTCCTGTGGTGATCGTTGGTAG 1890 44.71 MKAKELCFRLLYRCRRGKLKMLQKQRYSERQRITSALLATSAYALPGPLRIPRVPLSSLLPFTSSPIHVHYTSCASLPNPLPLLNFMSIRCICFLPPSPPSSIPWNSNELEDANSISKFTVEAGYQTLYRVLEACRLSPSNSKTASETHARMIKFGYGNYPTLVTSLVSAYQRADCLNRVHQLLNLLCSKHLDLVAMNLFIDNFMKIGECKLAKRVFDKMPYRDVVTWNSIIGGCVKNARYEEAFKFFRQMLNSNIQPDGFTFASVLNACAQLGAPSITQWVHALMTQKKIELNSILSCALIDAYSKCGSIQIAREIFSSVPRSNISVWNAMIKGLAIHGLSMDALSVFWMMERENVLPDAVTFLGILTACNHGGLIEQGRRFFDWMKNRYSIQPQLEHYGVMVDLYSRAGFLEEAYSIIVAMPIEADVVTWRALLSGCRIYRNQELAEVAIANMSHRGSGDYVLLSNIYCSLNRWEHAERVRERMKSNGVRKSCGKSWIELGGSIQSFKSGDRSHPESDAVYKVVWRLMKRSRSEGYMPVTDLVLMDISEEEKEENLSYHSEKLALAYAILKTSPGAKISISKNLRMCDDCHRWIKLVSTLLCRVVVVRDRIRFHQFEGGMCSCGDRW 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 25666 27704 - Carg10237-RA Car10g00005 154907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00005 629 Pfam PPR repeat 399 423 IPR002885 -
Car10g00005 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Car10g00005 629 Pfam DYW family of nucleic acid deaminases 537 629 IPR032867 GO:0008270
Car10g00005 629 Pfam E motif 442 501 IPR046848 -
Car10g00005 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Car10g00005 629 Pfam PPR repeat family 223 271 IPR002885 -
Car10g00005 629 Pfam PPR repeat family 325 371 IPR002885 -
Car10g00005 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00005 - - - cmos:111430093 1241.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00005 Car-Chr10:25666 Car03g00854 Car-Chr3:6884422 4.70E-25 dispersed
Car10g00005 Car-Chr10:25666 Car14g01752 Car-Chr14:13798526 4.88E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g11 . . Bda06g00704 . . . . Bma12g01100 . . Cma10g00008 . Car10g00005 . . . . . . . . . . . Cla06g01789 . . . . . . . . . . . . . . . . . . Bpe07g00912 . . . . Cmo10g00006 . . . . . . Cpe18g00944 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012825 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00005 Car_Chr10 FPKM 26.859762 27.734871 30.982784 31.981115 25.328836 22.011789 27.091164 21.372217 21.288404 24.630398