Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00006 ATGGATCCGGAAGCCCTCTCAGCAACTTTGTTCAAATGGGATCCTCGAGGAGTGGTGGGGGGCGGCAGCGGTGCATCCCTCCCAGCACCACTACCCCCCTACTCGCTGCGCCCCAGGGAGTTGGGACTAGGAGGCCTGGAGGAGTTGTTCCAGGCTTACGGTATCAGGTACTACACCGCCGCTAAAATTGCGGAACTCGGATTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTGGAGGACATGATGAACAGCCTCTCTCACATTTTCCGTTGGGAGCTTCTGGTGGGTGAGAGGTACGGAATTAAGGCGGCTATAAGAGCCGAGCGCAGACGTCTAGATGACGAGATCGACCCCTCCAGGCGCCGTCACCTCTTGTCCAACGACACCACCACCAACGTCGTCCTCGATGCCCTCTCTCAGGAAGGGCTATCGGAGGAGCCGGTGCAGCAGGAGAAGGAGGTGGTGGGAAGCGGAGGCGGAGGAGGAGCGTGGGAGGCAGTTGCAGCAGCTGAGATGAGGAAGAAGCAGCGGAGGAGAAACGTATCGAAGAAGAAGCAGGTGATAGTGATGGAGGAGGATAATGAGGAAACCGAGGGAGGTGGGGAGGAGGAGGAGAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACCGAACCAGGGGAGGTTGCACGGGGAAAGAAGAACGGCCTCGACTATCTCTTCCACCTCTATGAGCAGTGTCGTCAATTTTTGATCCAGGTCCAGAACATCGCCAAGGAACGAGGAGAAAAATGCCCCAATAAGCAGGTGACGAACCAGGTGTTTAGATACGCGAAGAAGGCGGGAGCAAGTTACATAAACAAGCCCAAAATGAGACACTACGTGCACTGCTATGCGCTGCATTGTCTGGACGAGGAAGCGTCGAATTCATTGAGGAGGGTTTTCAAAGAAAGGGGCGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCTCTGGTAGCCTTAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATCTGGTACGTGCCTACCAAACTCCGCCAACTCTGCCACGCCGAGCGCAACAGTTCCACAGCCTCCACCTCCGCTGCCGCCGCTCTCTTGCCTTTTTAA 1164 55.93 MDPEALSATLFKWDPRGVVGGGSGASLPAPLPPYSLRPRELGLGGLEELFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSLSHIFRWELLVGERYGIKAAIRAERRRLDDEIDPSRRRHLLSNDTTTNVVLDALSQEGLSEEPVQQEKEVVGSGGGGGAWEAVAAAEMRKKQRRRNVSKKKQVIVMEEDNEETEGGGEEEENMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRQFLIQVQNIAKERGEKCPNKQVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNSLRRVFKERGENVGAWRQACYKPLVALAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNSSTASTSAAAALLPF 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29840 31757 + Carg10238-RA Car10g00006 154908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00006 387 Pfam Floricaula / Leafy protein SAM domain 43 118 IPR035079 -
Car10g00006 387 MobiDBLite consensus disorder prediction 194 215 - -
Car10g00006 387 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 211 375 IPR035209 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00006 Car11g00003 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00006 Car-Chr10:29840 Car11g00003 Car-Chr11:14837 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4119 PF17538 C_LFY_FLO 8.10E-106 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00006 - - cmax:111484867 669.848