Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00007 ATGGTTTCTGCGTTAGCTCAAGTGATAACGAGTGGGAGTGGGAGTAGCAGAAGCCCAGTAGAAGCAGATTACTGGCCGCAATCGCAGCAAGCAGCAGCAGATGAAGAACAAGGTGGTGGAAGCAGGACGGGGATGGTGTCAAGAGAGAGGCATTATCGAGGAGTAAGGCAGAGACCGTGGGGAAAATGGGCAGCTGAGATTCGTGATCCGAAAAAGGCAGCAAGAGTGTGGCTGGGCACCTTCGACACTGCTGAGGCTGCCGCACTTGCTTACGATGAAGCTGCCCTCAGATTCAAAGGCACCAAAGCCAAGCTCAACTTCCCTGAGAGACTCACTACCCCATGCCCTCCGCCCCCCTATGCCTATCATCACCATCACAATAACCACAACCTATAG 396 53.54 MVSALAQVITSGSGSSRSPVEADYWPQSQQAAADEEQGGGSRTGMVSRERHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPCPPPPYAYHHHHNNHNL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33353 33748 - Carg10239-RA Car10g00007 154909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00007 131 Pfam AP2 domain 51 100 IPR001471 GO:0003700|GO:0006355
Car10g00007 131 MobiDBLite consensus disorder prediction 9 36 - -
Car10g00007 131 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Car10g00007 131 MobiDBLite consensus disorder prediction 9 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00007 - - - bhj:120071654 164.851
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00007 Car-Chr10:33353 Car03g00954 Car-Chr3:7415773 6.57E-33 dispersed
Car10g00007 Car-Chr10:33353 Car17g01287 Car-Chr17:9727913 2.98E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g17 . . . . . . . . . . Cma10g00010 . Car10g00007 . Sed14g0033 . . Bhi02g00606 Tan09g2439 Cmetu02g1402 . . . . Cla06g01787 Cam06g1985 Cec06g2035 Cco06g2043 Clacu06g1942 Cmu06g1882 Cre06g2693 . . Cone13ag0267 Cone19ag0251 . . . . . . . . . . . . . Cmo10g00008 . . . . . . . . . . . . . . . . . . . . . Lsi06g01687 Csa01g00006 . Cme02g02116
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003032 0 2 2 0 1 3 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 3 2 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4120 PF00847 AP2 1.80E-15 CL0081 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00007 Car_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0