Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00008 ATGCAGATGCTGAAGCTAGATGAACAGCAATATCTTGGTGAAGCAACTTGTGTACTATCTGAGATAGTGACCCAATCAGAAAGGTCACTTACCTTGGATCTAGTTTATAGAGAAGAATCAACCAGCTCTACTCATACACACCACCGTGGAAAATTTACTGTTCATGCTGAGGAGTGTGTTAGCTCAAAGACCACCACAGAGATGATATTAAGGTGTTCAGACTTGGAACACAAGGATCTCTTCTCACGAATTGACCCTTTTCTGGTTATTTCAAAAACTGTTGAGAGTAAGAGCTCAATTCCAGTTTGCAAAACTGAAGTCATAAAGAATGATTTGAATCCCACATGGAAGCCCGTATTCTTGAATATGCAACAAGTTGGAAGCAAGGACAGCCCCTTAATAATAGAGTGTTACAACTTCAACAACAACGGGAAGCATGAATTGATTGGAAAAGTTCAAAAATCACTTGTGGAGTTGGAGAAGCTTTCGTTTAGTGGGGAGGGAGAAAATCTGTTCTTACTTCCTTCTGCTGGACATGATTACCATATCAAAGTATTAAAAAGCCAGCTATTTGTGGACAAATTCTCTGAGAGCGTTCAACAAACGTTTCTTGATTACATAGCTGGTGGCTATGAAATGAACTTCATGGTGGCTGTTGATTTCACAGCTTCAAATGGAAATCCCCGCCTTCCTGATTCCTTGCATTTCATTGATCCTTCAGGACGGCCAAATTCATACCAGCGAGCAATCATAGAAGTTGGAGAGGTGTTGCAGTTTTATGACTCAGATAAACGCTTTCCTGCTTGGGGATTTGGAGCACGACCAATTGATGGTCCAGTATCTCATTGTTTCAACCTAAATGGAAGTAGTCACTACTGCGAGGTTGAAGGAACTCAAGGAATTTTGATGGCATATACAAGTGCGCTCCATAATGTATCTCTTGCAGGACCAACTCTTTTTGGGCCTGTGGTTAATAATGCTGCATTAATTGCCAGTCAGTCTCTCGCAAGTGGTGGGCGGAAGTACTTTGTTTTGCTCATAATCACTGATGGAGTGGTAACAGATCTCCAAGAAACTAAAGATGCTCTTGTGAAGGCATCTGATCTGCCATTGTCCATTCTCATTGTTGGAGTGGGTGGAGCTGACTTTAAAGAAATGGAGGTTTTAGATGCGGATAAGGGAGAGAGACTTGAAAGTACAACTGGACGTGTTGCCTCACGAGATATAGTCCAATTTGTTCCATTTCGGGATGTACAGGGTGGAGGGATTTCTGTTGTTCAAGAACTGCTAGCAGAAATACCTCATCAGTTTCTGACCTATATTCGAAGCAGAGATTGGGTATATCCGTTCAATGGTTGGCGTTTTTCCACGGGGACAGAAGTTTACGCGAGAGTGACTGTCGGCTTAGTTGTGCCTGGGACCTTTTTCCATTCTGGAGAATATGATAGTGAATATAGTGCTGAACCTCAGGACATGCCTGAATCCTAA 1488 42.2 MQMLKLDEQQYLGEATCVLSEIVTQSERSLTLDLVYREESTSSTHTHHRGKFTVHAEECVSSKTTTEMILRCSDLEHKDLFSRIDPFLVISKTVESKSSIPVCKTEVIKNDLNPTWKPVFLNMQQVGSKDSPLIIECYNFNNNGKHELIGKVQKSLVELEKLSFSGEGENLFLLPSAGHDYHIKVLKSQLFVDKFSESVQQTFLDYIAGGYEMNFMVAVDFTASNGNPRLPDSLHFIDPSGRPNSYQRAIIEVGEVLQFYDSDKRFPAWGFGARPIDGPVSHCFNLNGSSHYCEVEGTQGILMAYTSALHNVSLAGPTLFGPVVNNAALIASQSLASGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESTTGRVASRDIVQFVPFRDVQGGGISVVQELLAEIPHQFLTYIRSRDWVYPFNGWRFSTGTEVYARVTVGLVVPGTFFHSGEYDSEYSAEPQDMPES 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34808 41079 - Carg10240-RA Car10g00008 154910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00008 495 Pfam C2 domain 68 160 IPR000008 -
Car10g00008 495 ProSiteProfiles C2 domain profile. 48 172 IPR000008 -
Car10g00008 495 Pfam Copine 233 444 IPR010734 -
Car10g00008 495 ProSiteProfiles VWFA domain profile. 214 433 IPR002035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00008 - - - csv:101215724 808.905
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00008 Car11g00005 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00691 Car-Chr5:4667143 Car10g00008 Car-Chr10:34808 0 dispersed
Car10g00008 Car-Chr10:34808 Car15g00350 Car-Chr15:1861696 8.40E-24 dispersed
Car10g00008 Car-Chr10:34808 Car11g00005 Car-Chr11:26947 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g18 . Blo16g00293 . . . Bpe13g00181 Bma06g00290 . . . Cma10g00011 Cma11g00006 Car10g00008 Car11g00005 . . Cpe04g01639 . . . . . . . . . . . . . . . . Cone13ag0266 Cone19ag0250 . . . . . . Bda11g01570 . . . . . . Cmo10g00009 Cmo11g00005 . . . . . Cpe18g00942 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000909 3 5 3 2 2 2 3 3 2 2 2 2 3 1 2 3 2 3 3 2 2 2 3 2 2 2 1 4 6 9 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00008 Car_Chr10 FPKM 6.159629 5.854515 15.758551 15.244607 9.77945 9.874565 9.657543 13.541871 12.261337 14.360129