Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00012 ATGGCCTCCTCCGAGGTTTCCATCAACCCCAATTCCGCCTCCGTTCCCTTCAACGACCATGCCGATTCTACCAAACTCACCTCCGATCCACCTAACGCTCTCTCTGCCAGGGATGCTGATTTCGCCCTCTTCACCGAGCTTTGGAATGCTTGTGCTGGTCCTCTCGTTTCTGTTCCTCGCGAAAACGACCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCCACCAGTCAAGTGGCGGACCAACAGATGCCAGTTTATGACCTTCCATCCAAGATCCTCTGCCGCGTTATTAATGTGCATTTAAAGGCCGAGCCAGACACCGATGAGGTATTTGCACAAATAACTTTGGTTCCAGAGGCAAATCAAGATGAGCATGCTGTGGACAAGGAACCCCCGCCTCCTCCACCGCGGAGATTTCACGTGCATTCTTTTTGCAAGACTCTGACTGCCTCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGACATGTCACGACAGCCTCCTACACAGGAGTTGGTTGCCAAGGATTTGCATGGAAATGAATGGCGTTTTCGTCATATATTTCGAGGACAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGTGTTGGTGTTAGGCGTGCCATGAGACAACATGGTAACGTCCCTTCATCGGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCATGGCATGCTATTTCTACAGGCACAATGTTCACTGTCTACTACAAGCCTAGGACTAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGAGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAGCAGAGATTCACTGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGTCTGAAGGTGAGATGGGATGAGACTTCTACTATTACTCGTCCTGAGAAAGTCTCACCATGGAAAATTGAGCCTGCTCTTGCTCCTCCTGCACTGAACCCTCTTCCTATGACTAGACCTAAAAGGCCTCGATCAAACTTGGTGCCTACATCCCCTGATTCCTCTGTTCTTACTCGAGAAGGCTCATCAAGAGTGACTGTAGACCCTTCACCAGTCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTAAGGGGCAATTTTATCGATGGCAATGATCCTGATGCTGCTGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAAATTGATGTGGTTTCTACATCTAAGAAACATGGAGCAGATTGCTGGATAACTCCAGGAAGGAGTGAGCCAACCTACGCAGATCTTCTGTCAGGTTTTGGAACTAACCTTGATTCATCTCATGGTGTCCGAGCTGGCATGGGAGATCCAGCAGTAGTAACTGCTAATTCAATCAGAAAGCATGTCATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGCTCATGGTCTGTCTTGCCTTCTGGTCTCTCGCTCAACCTTGTGGACTCTAGTCAGAAGGGCCATATTCAGGCTGGTGACTTATCTTATCAAGTGAGAGGAAATGCTACCTTCAATGGATTTGGTGATCATTCCGTGGCCCATTGTCATAGAACAGAACAGCCTCATGGAAACTGGTTGATGGCTCCACTTACGTCTCATTTTGATTATCCAGTTCAGTCAACTGAACTAATGTCGATGCCTATGGTATTTCAGAATCAAGATATAATGAAACCCAAAGATGGGAATTGTAAGCTTTTTGGCATCTCTCTCATTAAGAATCCTGCCATTCCAGACCCTGCAGGATTGAATAGAAATATGAATGGGGCAGATGTTACGCATCTGAATATACATCAAATCCATTCAAACGAGTCTGACCTCAAGTCTGAACCATCTAGGGGTTCAATGTTGGCTGATAAATCCCTTGCCATTAATGATGCCGATAAGTTGCAGCAAACATGCACGCAAAACTTGAAGGATGCACACTGCAAATCACAGGGTACTTCAGCAAGGAGTTGTACAAAGGTCCAGAAGCAGGGGATTGCACTTGGAAGGTCGGTTGATCTTAGCAGGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAGTTTGGTGGCGAGCTGCTGGCTCCCAAAAAGAATTGGCTTATTGTATATACAGATGATGAAGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCGAGGATCTCTAAATTTGAAAGGCGATGAAAATCCATCTGTAGAAGGGAAAGAAGCAAAAGAGATTGAAGGTCAGGCAGTACCTTCGATATCCGCACCCGAGAGTTGTTAG 2553 45.95 MASSEVSINPNSASVPFNDHADSTKLTSDPPNALSARDADFALFTELWNACAGPLVSVPRENDRVFYFPQGHIEQVEASTSQVADQQMPVYDLPSKILCRVINVHLKAEPDTDEVFAQITLVPEANQDEHAVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTITRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNLVPTSPDSSVLTREGSSRVTVDPSPVSAFTRVLQGQEFSTLRGNFIDGNDPDAAEKSVMWPPSLDDEKIDVVSTSKKHGADCWITPGRSEPTYADLLSGFGTNLDSSHGVRAGMGDPAVVTANSIRKHVMDQDGKFNFLGGSSWSVLPSGLSLNLVDSSQKGHIQAGDLSYQVRGNATFNGFGDHSVAHCHRTEQPHGNWLMAPLTSHFDYPVQSTELMSMPMVFQNQDIMKPKDGNCKLFGISLIKNPAIPDPAGLNRNMNGADVTHLNIHQIHSNESDLKSEPSRGSMLADKSLAINDADKLQQTCTQNLKDAHCKSQGTSARSCTKVQKQGIALGRSVDLSRFNNYDELVAELDQLFEFGGELLAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNRGSLNLKGDENPSVEGKEAKEIEGQAVPSISAPESC 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 62700 68176 + Carg10244-RA Car10g00012 154914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00012 850 MobiDBLite consensus disorder prediction 383 422 - -
Car10g00012 850 ProSiteProfiles PB1 domain profile. 725 809 IPR000270 GO:0005515
Car10g00012 850 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Car10g00012 850 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Car10g00012 850 MobiDBLite consensus disorder prediction 1 31 - -
Car10g00012 850 Pfam AUX/IAA family 712 807 IPR033389 -
Car10g00012 850 Pfam Auxin response factor 275 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car10g00012 850 MobiDBLite consensus disorder prediction 816 850 - -
Car10g00012 850 MobiDBLite consensus disorder prediction 398 422 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02657 Car-Chr4:20702822 Car10g00012 Car-Chr10:62700 0 dispersed
Car10g00012 Car-Chr10:62700 Car15g01164 Car-Chr15:9141928 5.23E-32 dispersed
Car17g00567 Car-Chr17:5251553 Car10g00012 Car-Chr10:62700 6.05E-28 dispersed
Car20g00416 Car-Chr20:2338120 Car10g00012 Car-Chr10:62700 4.34E-29 dispersed
Car10g00012 Car-Chr10:62700 Car16g00472 Car-Chr16:3011343 5.74E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4121 PF02309 AUX_IAA 2.10E-11 CL0072 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00012 - - cmos:111429821 1692.55