Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00013 TCCGTGGACATCATGGCTGGAGTTCTGGTTCAGTCGACAGATATTCCTGGTCTGATCGGTGGGAGAAAGAATGGCCTATCAGGAGGGTCAGGAGATACAAAGCGGCCTGTTAAAATGATGGCCTGCGTACATGCTCCTGGTTTGAGAATCAGAAGTTTCTCTGGACTTCGAGGATTTAATTCTTTGGATAACATGTTGCGAAATGGACAAGATTTTCATTCCAGGGTGGCCATTACAATCTCGTCTAGGCGACGAAAGGCTAGCAGATGTGTTCCAAAAGCTATGTTTGAGCGATTCACAGAAAAGGCAATTAAAGTTATCATGCTTGCTCAGGAGGAAGCGAGGCGGCTTGGTCACAATTTTGTTGGCACAGAGCAGATACTTTTAGGTCTTATTGGTGAAGGCACTGGAATCGCTGCTAAGGTTCTTAAATCTATGGGAATCAATCTTAAAGATGCGCGCGTGGAGGTGGAGAAGATAATTGGTCGGGGCAGTGGCTTTGTTGCTGTAGAAATTCCGTTCACTCCTCGTGCAAAGCGTGTATTGGAACTTTCTCTTGAGGAAGCTCGCCAACTTGGCCACAATTATATTGGGTCAGAGCACTTGCTTCTAGGACTACTTCGGGAAGGTGAGGGCGTTGCAGCTCGTGTTATTCGAATGGTGGGTGAGAGCACAGAGGCTGTTGGTGCTGGTGTTGGAGGAGGAAGCAGTGGGAATAAGATGCCAACCCTGGAAGAGTACGGCACAAACTTAACTAAGCTGGCTGAAGAGGGTAAACTAGATCCTGTTGTTGGAAGGCAGCAGCAAATAGAACGTGTAACCCAAATTTTGGGTCGGCGGACAAAAAATAATCCTTGCCTCATTGGCGAACCTGGTGTTGGAAAAACTGCTATTGCAGAAGGTCTGGCCCAAAGGATTGCTAATGGGGATGTCCCTGAAACAATTGAAGGAAAGAAGGTTATAACTCTGGATATGGGCCTTCTTGTAGCTGGCACGAAATATCGTGGAGAGTTTGAGGAAAGATTAAAGAAACTGATGGAGGAAATTAAACAAAGTGATGAGATTATCCTTTTCATTGATGAGGTGCACACGTTAATTGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAATATATTGAAACCTGCCCTTGCAAGAGGTGAACTGCAGTGCATTGGAGCCACGACATTGGATGAATACAGGAAGCACATTGAAAAAGACCCAGCCTTAGAAAGGAGATTTCAGCCAGTGAAAGTGCCGGAACCATCTGTGGATGAAACCATACAGATTTTGAAAGGCCTTAGAGAGCGCTATGAAATCCACCACAAACTTCGTTACACAGATGAAGCATTAGTAGCTGCTGCGCAGCTGTCATACCAGTACATC 1389 46.08 SVDIMAGVLVQSTDIPGLIGGRKNGLSGGSGDTKRPVKMMACVHAPGLRIRSFSGLRGFNSLDNMLRNGQDFHSRVAITISSRRRKASRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYI 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 69082 73704 + Carg10245-RA Car10g00013 154915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00013 463 SMART AAA_5 281 421 IPR003593 -
Car10g00013 463 Coils Coil 335 355 - -
Car10g00013 463 Pfam Clp amino terminal domain, pathogenicity island component 186 227 IPR004176 -
Car10g00013 463 Pfam Clp amino terminal domain, pathogenicity island component 110 162 IPR004176 -
Car10g00013 463 ProSitePatterns Chaperonins clpA/B signature 1. 376 388 IPR018368 GO:0005524
Car10g00013 463 Pfam AAA lid domain 424 463 IPR041546 -
Car10g00013 463 ProSiteProfiles Clp repeat (R) domain profile. 96 239 IPR004176 -
Car10g00013 463 CDD AAA 264 416 - -
Car10g00013 463 Pfam ATPase family associated with various cellular activities (AAA) 286 402 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00013 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC - csv:101207083 784.252
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00013 Car11g00006 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00531 Car-Chr1:3110916 Car10g00013 Car-Chr10:69082 0 dispersed
Car10g00013 Car-Chr10:69082 Car13g00109 Car-Chr13:788203 0 dispersed
Car10g00013 Car-Chr10:69082 Car11g00006 Car-Chr11:33028 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g29 . . Bda06g00709 Bda15g00698 . . . . . . Cma10g00018 Cma11g00007 Car10g00013 Car11g00006 . . . . . . . . . . Cla06g01783 Cam06g1977 Cec06g2027 Cco06g2035 Clacu06g1934 Cmu06g1875 Cre06g2687 . . Cone13ag0256 Cone19ag0241 . . . . . Blo15g00190 . . Bpe07g00907 . . . . Cmo10g00016 Cmo11g00006 . . . . . Cpe18g00938 . . . . . . . . . . . . . . Lsi06g01681 Csa01g00010 Chy02g02703 Cme02g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00013 Car_Chr10 FPKM 3.702767 3.397613 56.58799 50.255878 251.997345 263.897308 249.53244 36.709682 39.311508 36.336567