Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00016 ATGGCTGCTCTTATTCTTCATCTTTGCATTTGCGAGGAGATTGTTCCCTCTTATGCTCAATCTGACAAGATTATCAGCCTTCCAGGGCAGCCCCCAGTGGGGTTTCATCAGTTTTCAGGTTATATTCATGTAGATGACCAAAATCACAGAGCACTGTTTTACTACTTTGTTGAGGCAGAAACTGACCCTTCTTCGAAGCCTTTGGTTCTCTGGCTGAATGGAGGGCCTGGCTGTTCTTCCCTGGGAGTTGGGGCGTTCTCAGAAAATGGACCTTTTAGGCCAAACGGGGAGGTTTTAGTGAAAAATGAATACAGCTGGAACCGAGTAGCAAACATGTTATACTTAGAGACACCAGCAGGAGTTGGGTTCTCTTATGCTCATGATAGCGCTTCTCATGGGGCAATGGACGATGAGGCCACAGCAAAAGACAATCTCATATTCTTGCAAAGGTGGTTCAATAAGTTCCCTCATTACAAGCATAGAGCTATATTTCTAACAGGGGAGAGTTATGCAGGTCATTACATTCCTCAACTGGCAAGGCTTATGACTGAATTGGACAGAAAGGAGAAGATATTTAATCTGAAGGGAATTGCTCTAGGGAATCCGGTTTTAGAGTATGCCACAGACTTGAATTCAAGGGCGGAGTTCTTTTGGTCGCATGGATTGATATCAGACTCCACTTACACATTGTTCACTGCTGCTTGTAACTATTCCCGATACGTTAGTGAGTACTACAGAGGCTCCATCTCAGGGGTTTGTTTGAGGGTGATGACCCAAGTCAACACAGAAACCAGTAAATTCGTGGACAAATATGACGTTACTCTTGATGTCTGTATTCCTTCAGTGCTCTCGCAGTCCAAGTACTTAAGCCCACAGCATGTCCGAGAGAGGATAGATGTTTGCATTGAAGATGAAACTGTTAAATATCTGAACCGAGAGGATGTGAAAAAGGCTCTTCACGCCCGTCTTGTCGGAGTCCACAACTGGGCTGTCTGCAGCGAAGCCCTGGACTACGAGCTTCTCAACCTGGAAATTCCTACCATTTCCATTGTTGGGTCACTTGTTAAAGCCGGCATACGGGTCTTGATTTACAGTGGCGATCAGGATTCAGTAATTCCATTGATGGGTAGTCGTCGGTTGGTTGATAGGTTGGCAACAGAGCTGGGTCTTAACACTAGTGTTCCATACGGTGCTTGGTTCCAGGGAAAGCAGGTCGCAGGTTGGACCCAAGTTTATGGTGGTATCCTTTCATTCGCGACCATTCGAGGTGCCTCTCATGAAGCACCATTCTCGCAACCTCAAAGGTCACTTCTGCTATTCAAGTCGTTTCTGGATAACAGGCCTCCACCCCAAGTTTTCTGA 1362 45.96 MAALILHLCICEEIVPSYAQSDKIISLPGQPPVGFHQFSGYIHVDDQNHRALFYYFVEAETDPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEVLVKNEYSWNRVANMLYLETPAGVGFSYAHDSASHGAMDDEATAKDNLIFLQRWFNKFPHYKHRAIFLTGESYAGHYIPQLARLMTELDRKEKIFNLKGIALGNPVLEYATDLNSRAEFFWSHGLISDSTYTLFTAACNYSRYVSEYYRGSISGVCLRVMTQVNTETSKFVDKYDVTLDVCIPSVLSQSKYLSPQHVRERIDVCIEDETVKYLNREDVKKALHARLVGVHNWAVCSEALDYELLNLEIPTISIVGSLVKAGIRVLIYSGDQDSVIPLMGSRRLVDRLATELGLNTSVPYGAWFQGKQVAGWTQVYGGILSFATIRGASHEAPFSQPQRSLLLFKSFLDNRPPPQVF 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 89680 91992 - Carg10248-RA Car10g00016 154918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00016 453 ProSitePatterns Serine carboxypeptidases, histidine active site. 416 433 IPR033124 GO:0004185
Car10g00016 453 Pfam Serine carboxypeptidase 29 446 IPR001563 GO:0004185|GO:0006508
Car10g00016 453 ProSitePatterns Serine carboxypeptidases, serine active site. 165 172 IPR018202 GO:0004185
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00016 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - nnu:104591835 730.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02338 Car-Chr4:18819312 Car10g00016 Car-Chr10:89680 6.56E-127 dispersed
Car09g00988 Car-Chr9:6348708 Car10g00016 Car-Chr10:89680 1.36E-134 dispersed
Car10g00016 Car-Chr10:89680 Car14g01233 Car-Chr14:10687808 1.69E-144 dispersed
Car14g00508 Car-Chr14:2794512 Car10g00016 Car-Chr10:89680 9.10E-22 dispersed
Car14g01234 Car-Chr14:10690467 Car10g00016 Car-Chr10:89680 6.34E-63 dispersed
Car18g00810 Car-Chr18:9164825 Car10g00016 Car-Chr10:89680 1.11E-91 dispersed
Car10g00016 Car-Chr10:89680 Car06g00737 Car-Chr6:4894525 1.63E-170 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g33 . . . . . . . . . . Cma10g00024 . Car10g00016 . . . . Bhi02g00627 . . . . . . Cla06g01779 Cam06g1972 Cec06g2023 Cco06g2030 Clacu06g1930 Cmu06g1870 Cre06g2683 . . Cone13ag0254 . . . . . . . . . . . . . . Cmo10g00021 . . . . . . Cpe18g00936 . . . . . . . . . . . . . . Lsi06g01676 Csa01g00015 Chy02g02698 Cme02g02105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000392 2 9 3 2 3 4 5 4 4 5 3 3 4 5 5 3 4 4 3 4 5 5 3 5 6 4 2 6 3 8 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00016 Car_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 1.00152 0.0 0.0 0.0 0.0