Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00020 ATGAACCCATGTAGCTGGGAGTTAGAAGAGGCGCCACAAATCCCCCACTTTCACCACCTTCTTCCACCTCAAATCCAATCTTCCTCGGCTCAGCAAACTGCCCACCACCACCACCTCCCGCCTCGCATATTACCCACCGCCACCAACTCATTGCCTTCTTCCCACTCTCTCTCTCCGTCCAAGGAGGACCCAAATGAAAGAGGGGGCGACGGCAAGAGGAGAGGCTACAAGCGTGCAAAAGCAGGAGGAGGCCGCAAGAAGCTCAAAACCCAAGACCACCCTCAAGTTTCTCCACCACCAGGGTACATCCACGTAAGAGCCAGGAGGGGTCAGGCCACAGACCGCCACAGCCTTGCAGAAAGGGTGAGAAGACAGAAAATCAGCCAAAGGATGAAGGTTCTGCAGACGCTTGTTCCAGGCTGCCACAAGGTAACTGGGAAGGCCCTTATGCTCGACGAAATTATCAACTATGTTCAGTCCCTGCAAAGTCAAATTGAGCTTCTGTCCATGGAGCTTGCTTCTGTTCACCCCATCCGCTATGACTTTGGAATGGATAATCCAGAGGTATTCATCGGTACGCCAGTCACACAGGTATTGAACGGGAGTGGCATGGTGTCACGTTCAGAGCAGACAGAATTGGCATATAATATGGCGTCATGCAACACATTTCAGGCCACAGGCGGTGGCGGTGGTGACAGCCCAATCTTAACGGCTGAAAACGGCAGCTTTATCCCAGTGGACATGAATCCATCTCAAGTTTTCCTGGATTATGGGAATGCTTCTCTGCAACATCTGTCGTGA 801 52.18 MNPCSWELEEAPQIPHFHHLLPPQIQSSSAQQTAHHHHLPPRILPTATNSLPSSHSLSPSKEDPNERGGDGKRRGYKRAKAGGGRKKLKTQDHPQVSPPPGYIHVRARRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIELLSMELASVHPIRYDFGMDNPEVFIGTPVTQVLNGSGMVSRSEQTELAYNMASCNTFQATGGGGGDSPILTAENGSFIPVDMNPSQVFLDYGNASLQHLS 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 102908 104318 + Carg10252-RA Car10g00020 154922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00020 266 MobiDBLite consensus disorder prediction 60 77 - -
Car10g00020 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 161 IPR011598 GO:0046983
Car10g00020 266 Pfam Helix-loop-helix DNA-binding domain 115 162 IPR011598 GO:0046983
Car10g00020 266 MobiDBLite consensus disorder prediction 26 102 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00020 Car18g00247 CCT
Car10g00020 Car13g00670 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00020 Car-Chr10:102908 Car08g00218 Car-Chr8:1369372 1.38E-44 dispersed
Car10g00020 Car-Chr10:102908 Car13g00670 Car-Chr13:8171756 6.81E-24 wgd
Car10g00020 Car-Chr10:102908 Car18g00247 Car-Chr18:1434555 1.66E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4122 PF00010 HLH 8.10E-07 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00020 - - cmos:111429828 482.641