Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00028 ATGGATTCCTCGTCTCTTAACTCCCCGGAGCTGATGAATTTTATCAATGAAGAGAAGCAAAGAGCTATGGTTGCCGAGATGGTGGCTAAGCTTACCAGTGTGTGTTGGACCAAGTGTGTCACTGGTACGCCAGGGAGTAAGTTCAGTTCTAGTGAATCCAACTGTCTATCAAACTGTGCCCAGCGCTATATGGATATGAGCATCATCATTATGAAGCGATTCCAAAACAGAATGAAAGTTCATATAATTTTGGTTGCCTCAAAAGACATCCTTCATTGGCCTTTCCACTTTGGTTCCAATCTACCTCAAATCCCCACTATATCAGCTTCCAATTGCTATGATAATGACAGACTGGAATTTGATTTGTAG 369 42.01 MDSSSLNSPELMNFINEEKQRAMVAEMVAKLTSVCWTKCVTGTPGSKFSSSESNCLSNCAQRYMDMSIIIMKRFQNRMKVHIILVASKDILHWPFHFGSNLPQIPTISASNCYDNDRLEFDL 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 130751 132272 + Carg10260-RA Car10g00028 154930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00028 122 Pfam Tim10/DDP family zinc finger 13 76 IPR004217 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00028 K17780 TIM8; mitochondrial import inner membrane translocase subunit TIM8 - csv:101209758 153.295
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g01199 Car-Chr15:9324408 Car10g00028 Car-Chr10:130751 4.63E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g59 . . . . . Bpe13g00191 Bma06g00277 . . . Cma10g00038 Cma11g00015 Car10g00028 . Sed01g3768 . . Bhi02g00651 Tan09g2409 Cmetu09g1954 . Hepe09g0026 . . Cla06g01766 . . . Clacu06g1915 Cmu06g1856 Cre06g2669 . . Cone13ag0245 . . Csa01g00769 . . . . . . . . . . . . Cmo11g00014 . . . . . . . . . . . . . . . . . . . . . Csa01g00029 . Cme02g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002836 0 1 0 3 1 1 2 2 2 1 3 2 4 2 1 2 2 1 2 2 2 2 2 0 2 2 3 1 1 3 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00028 Car_Chr10 FPKM 5.265467 5.222937 16.397661 16.166742 36.373226 35.490826 38.881172 18.200394 18.167068 22.258814