Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00037 ATGCCCAGGAGGCGCCTTCGACTGAGCTGTTCTTCCGATGAAGACCACGAAAACGAAGACTTCGAACATGATCCTCAGTGCCCAGATTCCTCCACCACCTCTCTTCAGCCTCCCATTATCGACAATCTTAACTCTCATTTTAATCCCAACGTTTCTGAGCCCGTCCAACTTTCCGACGACGACGACGAACAAGATTTTATCGATGTCTCCGAACATCTCTCGCCTCCCTCTCCGGACTCTGATCATTCTCTCCGTCACTCGCCTGAGCCGAATCCTCATGTCGCTTCCCGCGAGCCGTCGTGTCCTGTGAGTGAGTTCCTTCGGGGACTTGGTTTAAGCTTGAAGAGAGAGTGGCTGGATGCCTGTATCCGTGCCCATCATGGGTCTGTACCGGGTTTTTTGAGCCTCAACCCAGCAGAGAAAGGAAAGCTGTGTTTTGAGCAGTTTTTGGTTTCTGATATGAATTACGCGGGTGCTGGTGTCCTGCCCGAAAATGTTGATTCTATGCATCTCGTTGATCTCCCTGGTCCATACGTACTGCAGGTCGATGAGATAGTTAACATCAGTTGTCCTCTAAAGGGTAGATATCAGACTGCCCCTGCGAGTATTAAGAGGTGCCTTAAGCTGTCTATGACGGATGGTGTTCAGCGAGTTTTTGGCATGGAATACAGGCCTATTAAGGGTCTTGAAGTTTTAGCACCTGCTGGGTTGAAGGTAGTGATCTGCAATGTAAGTGTACGGCGTGGGGTTCTAATGCTAGTTCCTGAAGCTTTTGAGGTTCTAGGAGGTCTGGTTGAAGAACTGGAGTCAGCTCGGCAGCGGCTGGTTGATGAAGTGAACAAGCCACCTAGAGGAAGGAGAACGAGGACAGGCGTGGTTCCTCCCTTGGCAACTAGAGCCACACATGCCGCATGGCCATCGGACACTGTTCCAGAGCCCGTGCACTCTAGCAGAATAGTGGATACTGAACCTTCTCGTTCAGACCAAGGTGTTCACATGTTCCATAGGGGAAATGAAGCAGTCACTGCTCCAGTTAGTGATGCATTTACTACCCCAGTCGGCAGACCAAATGCGAATTCTGAGCTATCTACTAATTTTGTTTCAAATGTTGAGGAGGTTCATTTACATTCCGTTCCCAGTAGTAGAGCTAGAACTGTGTCTACTATTATGTCCAATTCAATAGAGGATACCAATACGGTCAATTCGATAGAAGGCACCAATATGGTCAATTCCGTAGAGGACACCGATATGGTTGATATTGAGCATCCACTCATTTTATCTGGTGATAGGGAAATGCCTTTCACTTACTTGGCTAGTTTGTCGGCTAAGTGGGCATCAGGGAAGGAAAAATCTCCATCAGTTCGTGGAAAAATCAAGTGCTTTTTGACTGGTGTAAAAGGATTTCAATTCAGGCAAAGGACAACATACGATCTACATGCTTATGTGGATGACGGCAGCCTCATTTCTGAGGTCCTCATTGATCACGAGGCTGTACAGCAAGCGATTGGCCATTCTCCCAAGGATGTAACAGATGCTCTTGGTTCTTCTGATGTCAAAGTAGTGAGTGGCATGAAGGAGGCTTTGAGACAGTTTCAAATTTTCTTGGTAAATTTTGAGGGTACAATGCTGGTTGAGATGAATAGAACGTCTTCTCTGCCAGTTGTCCTTGAGATGGAGGAGGGTTGTCTGGAATCTGATGCTTGGCTGCTTTTGAGAAGACTCGAATGTTCGAATGCTGTTCAAACCGATGAGCATGCCCGTACAGACCCTATAGATGTGTCCCCTTAA 1788 47.48 MPRRRLRLSCSSDEDHENEDFEHDPQCPDSSTTSLQPPIIDNLNSHFNPNVSEPVQLSDDDDEQDFIDVSEHLSPPSPDSDHSLRHSPEPNPHVASREPSCPVSEFLRGLGLSLKREWLDACIRAHHGSVPGFLSLNPAEKGKLCFEQFLVSDMNYAGAGVLPENVDSMHLVDLPGPYVLQVDEIVNISCPLKGRYQTAPASIKRCLKLSMTDGVQRVFGMEYRPIKGLEVLAPAGLKVVICNVSVRRGVLMLVPEAFEVLGGLVEELESARQRLVDEVNKPPRGRRTRTGVVPPLATRATHAAWPSDTVPEPVHSSRIVDTEPSRSDQGVHMFHRGNEAVTAPVSDAFTTPVGRPNANSELSTNFVSNVEEVHLHSVPSSRARTVSTIMSNSIEDTNTVNSIEGTNMVNSVEDTDMVDIEHPLILSGDREMPFTYLASLSAKWASGKEKSPSVRGKIKCFLTGVKGFQFRQRTTYDLHAYVDDGSLISEVLIDHEAVQQAIGHSPKDVTDALGSSDVKVVSGMKEALRQFQIFLVNFEGTMLVEMNRTSSLPVVLEMEEGCLESDAWLLLRRLECSNAVQTDEHARTDPIDVSP 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 163123 167190 + Carg10269-RA Car10g00037 154939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00037 595 MobiDBLite consensus disorder prediction 1 100 - -
Car10g00037 595 Pfam Recq-mediated genome instability protein 1, C-terminal OB-fold 432 574 IPR032199 GO:0000166
Car10g00037 595 MobiDBLite consensus disorder prediction 1 26 - -
Car10g00037 595 MobiDBLite consensus disorder prediction 306 328 - -
Car10g00037 595 Pfam RecQ mediated genome instability protein 111 273 IPR013894 -
Car10g00037 595 MobiDBLite consensus disorder prediction 27 55 - -
Car10g00037 595 MobiDBLite consensus disorder prediction 78 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00037 K10990 RMI1, BRAP75; RecQ-mediated genome instability protein 1 - csv:101222548 922.539
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g74 . . Bda06g00720 . . . . Bma12g01086 . . Cma10g00048 . Car10g00037 . Sed03g2779 . . Bhi02g00662 Tan09g2394 Cmetu02g0524 . . . . Cla06g01757 Cam06g1949 Cec06g1998 Cco06g2004 Clacu06g1906 Cmu06g1846 Cre06g2660 . . Cone13ag0234 Cone19ag0220 . . . . . Blo15g00201 . . Bpe07g00896 . . . . Cmo10g00043 . . . . . . . . . . . . . . . . . . . . . . Csa01g00040 Chy02g02679 Cme02g02082
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010501 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 0 1 1 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00037 Car_Chr10 FPKM 16.049767 15.615604 8.859925 10.363505 8.182415 7.155072 7.59628 0.721311 0.88261 0.841695