Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car10g00047 | ATGGAGAGTAACAACCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCCTTACACCACCTCCTTCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGTCAAGAAATCGAACAGGTTAATGACTTTAAAAACCATCAGCTTCCTTTGGCCCGCATTAAGAAGATCATGAAAGCCGATGAGGACGTGCGTATGATATCCGCTGAGGCACCCATTTTGTTCGCCAAGGCGTGCGAGCTCTTCATTCTTGAACTCACGATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCTGCCATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGTGGCATGGTTGGAGCCACTGCCAGTGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGGCCCCCTGGGGGGATGATGATTGGGAGACCAGCAATGGATCCCACCGGAGTCTACGCTCAGCCGCCGTCGCAGGCGTGGCAATCGGTGTGGCAGCCGGCCGCAGAGGATGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGCAATCTTGATGGTCAGAGGTAG | 663 | 55.35 | MESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQR | 220 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 201929 | 202591 | + | Carg10279-RA | Car10g00047 | 154949 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car10g00047 | 220 | MobiDBLite | consensus disorder prediction | 204 | 220 | - | - | |
| Car10g00047 | 220 | MobiDBLite | consensus disorder prediction | 182 | 220 | - | - | |
| Car10g00047 | 220 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Car10g00047 | 220 | Pfam | Core histone H2A/H2B/H3/H4 | 44 | 119 | IPR007125 | GO:0003677 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car10g00047 | Car-Chr10:201929 | Car10g00938 | Car-Chr10:7487376 | 5.44E-69 | dispersed | |
| Car16g00529 | Car-Chr16:3359685 | Car10g00047 | Car-Chr10:201929 | 1.88E-31 | transposed | |
| Car10g00047 | Car-Chr10:201929 | Car11g00029 | Car-Chr11:135980 | 3.29E-156 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4125 | PF00808 | CBFD_NFYB_HMF | 2.20E-17 | CL0012 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car10g00047 | - | - | cmax:111500215 | 329.717 |