Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00060 ATGACGTCGACGTATCTTCTATATGAATCTGCTTCTGGTTATGCTCTGTTTCATGCCCATGGTCTCGACGAAATTGGGCAGAATACTGAAGCCGTTCGGAGCTCCGTCTCCGACCTTAACCGCTTCGGCAAGGTCGTGAAGCTTGCTGCTTTCCACCCCTTTGAGTCGGCTCTCGATGCGCTCAAGCAGTGCAACTCGGTCTCCGAAGGGCTCATGACTGATGAGCTTAGGAGTTTTCTGGAAATTAACCTTCCAAAAGTTAAGGAAGGCAAAAAGGCCAAGTTCGTTTTGGGACTCGCTGAACCCAAAATTGGTTCTAACATATTTGAAGAGACTAAAATTCCATGCCAAAGCAATGAGTTCGTTCTGGAGCTGCTTCGCGGTGTGCGACTACACTTCGACAAATTTATCAAAGACCTCAAGACGGGGGATTTGGAGAAAGCCCAACTTGGTCTGGGACACAGTTACAGTCGAGCAAAGGTCAAGTTCAATGTTAACCGTGTTGATAACATGGTGATTCAAGCTATCTTCCTTCTTGACACTCTAGACAAGGACATTAATTCCTTCTCCATGAGAGTCAGAGAATGGTATTCCTGGCATTTCCCCGAGTTGGTGAAGATTGTCAGTGACAATTATCTTTATGCTAAAGTTTCTAAATTCATTGAGGACAAATCGAAGTTGGCTGAAGATAAAATCCCTGCCTTGACTGATATTATTGGTGATGAAGATAAAGCAAAGGAGATTGTTGAAGCAGCTAAAGCCTCCATGGGCCAGGATTTGTCTCCTATTGACTTGATTAATGTCCAGCAATTTGCACAGAGGGTGATGGATCTATCTGAATACAGGAAGAAGCTTTTTGATTATCTAGTTGCTAAAATGAATGATATTGCTCCCAATTTGGCCTCTTTGATTGGTGAAGTTGTTGGTGCCCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTGGCCAAGTGCCCTTCTTCCACCCTTCAGATTCTCGGTGCTGAGAAAGCACTCTTCAGGGCTTTGAAGACAAAAGGAAACACTCCTAAATATGGTCTGATCTTTCATTCTTCTTTCATTGGGCGAGCATCTGCACGGAACAAAGGTCGAATGGCTCGTTATCTTGCAAACAAATGTTCTATTGCATCACGTATTGATTGCTTTGCAGAGAATAGTACCACAACCTTTGGAGAGAAACTTCGTGAGCAAGTTGAAGAGCGCCTTGACTTTTATGACAAGGGAATAGCACCTCGTAAAAACATAGATGTTATGAAATCTGCAATTGAAAGTGCTGATAACAAAGCAACTGATATGGACATTGAAGAAGTGGCAAGTGAAGCTTCAGGGAAAAAGAGTAAGAAGAAGAAATCAAAAGCTAGTGCAAACGGTGAGGTTGAGGACAGACCAAGTGCCACTGAAAACGGTGACGCGAAGTCAGAAAAGAAGAAGAAGAAGGAGAAGCGAAAGTTGGATAAGGAAACAGAGGAGGAGCAGCAGCAGCAACAGGCTTCAGAAATGTTAAATGGAGAAGTAAACGGGGAGGAAGAAGCAGGCAAGAAGAAGAAGAAAAAGAAGAGCAAGGAGGAGGATCATGTTGCTGCAGAAGACAGTAAGAAGAAAAAGAAGAAGAAGTCGAAAAGCGAAGATGCCGAATAG 1659 43.34 MTSTYLLYESASGYALFHAHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPFESALDALKQCNSVSEGLMTDELRSFLEINLPKVKEGKKAKFVLGLAEPKIGSNIFEETKIPCQSNEFVLELLRGVRLHFDKFIKDLKTGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVSDNYLYAKVSKFIEDKSKLAEDKIPALTDIIGDEDKAKEIVEAAKASMGQDLSPIDLINVQQFAQRVMDLSEYRKKLFDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTKGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAENSTTTFGEKLREQVEERLDFYDKGIAPRKNIDVMKSAIESADNKATDMDIEEVASEASGKKSKKKKSKASANGEVEDRPSATENGDAKSEKKKKKEKRKLDKETEEEQQQQQASEMLNGEVNGEEEAGKKKKKKKSKEEDHVAAEDSKKKKKKKSKSEDAE 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 273175 277255 + Carg10292-RA Car10g00060 154962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00060 552 ProSiteProfiles Nop domain profile. 296 414 IPR002687 -
Car10g00060 552 Pfam NOP5NT (NUC127) domain 5 70 IPR012974 -
Car10g00060 552 MobiDBLite consensus disorder prediction 459 500 - -
Car10g00060 552 Coils Coil 477 504 - -
Car10g00060 552 MobiDBLite consensus disorder prediction 444 552 - -
Car10g00060 552 MobiDBLite consensus disorder prediction 513 552 - -
Car10g00060 552 Pfam snoRNA binding domain, fibrillarin 178 410 IPR002687 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00060 K14564 NOP56; nucleolar protein 56 - csv:101216223 896.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00060 Car-Chr10:273175 Car18g00738 Car-Chr18:8470464 1.61E-17 dispersed
Car10g00060 Car-Chr10:273175 Car12g01073 Car-Chr12:10510782 6.35E-112 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g142 . . Bda06g00736 . . . . Bma12g01076 . . Cma10g00072 . Car10g00060 . . . . Bhi02g00536 . . . Hepe09g0060 . . Cla06g01731 Cam06g1922 Cec06g1972 Cco06g1976 Clacu06g1878 Cmu06g1820 Cre06g2635 . . Cone13ag0211 Cone19ag0200 . . . . . Blo15g00215 . . Bpe07g00883 . . . . Cmo10g00069 . . . . . . . . . . . . . . . . . . . . . Lsi06g01631 Csa01g00068 Chy02g02652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003680 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 3 1 1 3 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00060 Car_Chr10 FPKM 40.24535 42.357704 83.822342 80.837502 92.903023 101.650078 90.60955 66.651054 69.379517 63.786167