Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00061 ATGGCCAGTAGTTCTGGATCAGCGAGATTACAAGATGTCCCCTCCATCGATCTCATGTCCGAGCTCCTCCGTCGAATGAAGTGCGCTTCAAAACCCGACAAGCGCCTTATTCTCATTGGTCCACCTGGATCAGGAAAAGGCACCCAATCGCCAATCATCAAGGATGAATACTGCTTGTGTCACTTGGCTACTGGTGATATGTTAAGAGCTGCTGTTGCTGCAAAAACCCCACTTGGCATTAAGGCTAAGGAGGCTATGGACAACGGTGGACTTGTGTCTGATGACTTGGTTGTTGGCATCATAGATGAAGCAGTCAAGAAGCCTTCATGTCAGAAAGGTTTTATTCTTGATGGATTTCCTAGAACAGTGGTCCAAGCACAGAAGCTCGATCAGATGCTAGAAAAGCAGGGTACTAAAATTGATACGGTGCTTAACTTTTCCATTGATGATGCGATCTTGGAGGAGAGGATTACAGGACGATGGATACACCCATCAAGCGGAAGGTCTTACCACACGAAATTTGCTCCTCCAAAAGTTGCTGGTGTTGATGATGTCACGGGGGAACCTTTGATTCAACGGAAGGATGATACTGCAGCAGTTCTCAAATCTCGGCTGGAGGCTTTCCACAAGCAAACAGAGCCGGTGATTGATTACTATTCCAAGAAGAAAATTGTCGCAGAGCTTCAAGCAGAGAAGCCTCCCAAAGAGGTAGCAGAAGAGATTCAGAAAGTGCTCTCATCCTAG 744 46.64 MASSSGSARLQDVPSIDLMSELLRRMKCASKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDNGGLVSDDLVVGIIDEAVKKPSCQKGFILDGFPRTVVQAQKLDQMLEKQGTKIDTVLNFSIDDAILEERITGRWIHPSSGRSYHTKFAPPKVAGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKKIVAELQAEKPPKEVAEEIQKVLSS 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 277588 279847 + Carg10293-RA Car10g00061 154963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00061 247 Pfam Adenylate kinase, active site lid 160 195 IPR007862 GO:0004017
Car10g00061 247 Pfam Adenylate kinase 38 223 - -
Car10g00061 247 Hamap Adenylate kinase [adk]. 34 246 IPR000850 GO:0005524|GO:0006139|GO:0019205
Car10g00061 247 ProSitePatterns Adenylate kinase signature. 114 125 IPR033690 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00061 K00939 adk, AK; adenylate kinase [EC:2.7.4.3] - csv:101216714 457.603
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00061 Car18g00219 CCT
Car10g00061 Car18g00219 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02392 Car-Chr4:19149581 Car10g00061 Car-Chr10:277588 7.23E-36 dispersed
Car10g00061 Car-Chr10:277588 Car12g01137 Car-Chr12:11039232 4.03E-41 dispersed
Car10g00061 Car-Chr10:277588 Car11g01321 Car-Chr11:10892161 3.34E-08 wgd
Car10g00061 Car-Chr10:277588 Car14g00645 Car-Chr14:3594148 4.52E-08 wgd
Car10g00061 Car-Chr10:277588 Car18g00219 Car-Chr18:1240704 5.78E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g143 . . Bda06g00737 . . . . Bma12g01075 . Cmo18g00202 . . Car10g00061 . . . . Bhi02g00537 . . . Hepe09g0061 . . . . . . . . . Cone2ag0964 Cone16ag0028 . Cone19ag0199 Lsi02g00488 Csa01g00950 Chy12g01181 Cme12g01602 . Blo15g00217 Bda11g01817 . Bpe07g00882 . . . . . . . . . Car18g00219 Cpe09g00971 . Bhi08g01461 . . . . . . Cla03g00344 Cam03g0360 . Cco03g0365 Clacu03g0361 Cmu03g0966 Cre03g0659 . Csa01g00069 Chy02g02651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003681 2 2 1 2 2 1 2 0 0 2 1 1 1 2 2 2 1 2 2 1 2 2 2 2 2 0 2 2 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00061 Car_Chr10 FPKM 3.592592 3.466225 15.173947 13.130132 21.622501 23.275135 21.676992 0.0 0.0 0.0