Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00063 ATGGCTCCGACTGTTCCTATAGAGTTTGCTGGACAGAAGGAATCTCGTAAGTATTCACTCTCACAGGCAATGGGGAAATCGAGGAAATATTCCAAAGGGCTTTCTTTTGGTTTTGTTCCAGATTACCGACATGCTGTGGAAACTGTTGGCGAATCAGAAGGGTTTGGGAGCTCTGGACGAATGGATACTGGAATCTCTACTCTTGATGATTCACGGGCCATTAAGAGGAAACGTGTTAGTATGAATGCAGAGGGTCACGATTGTTTTGGTGCTCCGCTTCAAGTTTTTTCTCTATCAACATTGTCTCGATCTGAAAGGAAGGATTTAGAGATAAGGTTAAAGTTAGAACTTGAGCAGGTTCGGGTGCTGCAAAAGAAAGCTTCTAATGTTAGTTCAATTTTTGCCGTCTCATCATCTTGTAATAATCAGAGCTCCAGTGATCAGCACAGGGTAGCTCCCCCAGAGACTTTTAATAGGTCATCCGAGACAGTTCCTCCTGCTAAAAAGCTACTGCCCTCTGGGCGCAATGGCCCTTCTGCTAAAAGGAGTTCATCTGGGCGTTTTGAGTCGATTAAACCAGTTGTTGTGTCTGCTTCCTCGACAGCGACATTGAAACAATGTGAACAGCTGCTGCAACGTTTGATGTCGCATCAATTTGGTTGGGTTTTTAACACCCCAGTGGATGTGGTTAAATTGAATATTCCAGATTACTTTAATGTTATAAAGCATCCAATGGACTTGGGCACTGTGAAGTCGAAGATTGCTGCAGGAGAATACACACATCCTGTGGATTTTGCTGCCGATGTTCGGCTTACTTTCTCAAATGCGATGACTTACAACCCTCCCGGGAATGATGTCCATACCATGGCTAAGACACTAAGTAAATATTTTGAAGTTAGATGGAGAACTATAGAGAAGAAGCTCCCTGTAACAACTGAAGAACAACGTCAAGTACCTTCAGCCTCAATTGTTCATAAGGAAGCTGAAAGTACTCTGCCCGTGCCACCTTCAAAAAAGACAAAAATACCTACAAATGAACCTGATGTTCAACTAAACACTGTGGTAAAAATCATGACTGACCAGCAGAAGCATAAACTAAGTGTAGAGTTGGAGGCTTTGCTAGGAGAGTTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATTCTCAAGCTGGAGAGGATGAGATTGAAATTGACATCGATGCTCTTAGTGATGATACCTTGTTTGAATTGAGGAAGCTACTGGACGATTATATGATGGAAAAGCAGGAGCGCACAAAGGTTGAACCATGTGTAGTGGAGCTTCGTAATGAATCTGGCTTTAGCAATTCATCGGTGCCACCTTGTAAAGGAGACGATCCTGTTGACGAGGATGTTGACATTGTTGGTGGAAATGACCCCCCTGTTTCAAGCTATCCTCCAATAGAGATAGAGAAAGATGCCGTCCGTAGAGATAGTAAATGCAGTAATTCCAGTAGCTCAAGTAGTGAATCAGGTTCATCATCTAGTGATTCTGGCTCAGAAAGTTTATCGGGAAGTGAATCTAATGCTGCTAAAGCTTTAGATAGTAATGTGGCTCCAAAGGAAATTTTGTGTTCTGAAACAAATGTGGATCAGAAGCAATGTGAACTTGGAGAAATAGAAATTAGAAATTATGAAGAAAGTGGGACTGGTCTAGTTGAGCAAACCACCCAGGCTAATACAAACACGATTGAGATGGATAGCTACCAAGAGGAGGGGGAGAGTGCTCCATCTAAGAGGCAAGTCTCCCCCGACAGGCTTTACCGTGCAGCTTTATTAAGGAATCGTTTTGCTGACACAATACTGAAAGCTCGAGAAAAGGCTCTTGAAAAGGGTGAGAAGAGGGATCCTGAAAAAGTGCGAATGGAGAGGGAAGAACTTGAGAGACAGCAAAGAGAAGAGAAAGCCCGGTTGCAAGCAGAGGCAAAAGCTGCAGAGGATGCTCGCAGGAAGGCGGAAGCTGAAGCTGCGGCTGAAGCTAAGAAGAAAAGGGAGTTGGATAGAGAAGCTGCTCGTCAGGCCCTACTCAAGATGGAGAAGACTGTTGATATTAACGAGAACAGTCAATTCATGGAGGATCTAGAAATGCTTAGGGCTTCCAACGACGAGCACCTACCGAACTTCACAGAGGAGTCCAGCCCAGAACATTCTCAGAATGGATTTGGCAGTTTCAAGCTTCAAGGTAGTAACCCCTTGGAACAACTTGGCTTGTACATGAAGGTGGATGAGGAAGATGAGGAGGATGAAAGGGAACCACCCCCCCAAAGTGTTAATAAGCCAGCAAATGACGTTGAAGAAGGGGAAATTGATTAG 2343 43.92 MAPTVPIEFAGQKESRKYSLSQAMGKSRKYSKGLSFGFVPDYRHAVETVGESEGFGSSGRMDTGISTLDDSRAIKRKRVSMNAEGHDCFGAPLQVFSLSTLSRSERKDLEIRLKLELEQVRVLQKKASNVSSIFAVSSSCNNQSSSDQHRVAPPETFNRSSETVPPAKKLLPSGRNGPSAKRSSSGRFESIKPVVVSASSTATLKQCEQLLQRLMSHQFGWVFNTPVDVVKLNIPDYFNVIKHPMDLGTVKSKIAAGEYTHPVDFAADVRLTFSNAMTYNPPGNDVHTMAKTLSKYFEVRWRTIEKKLPVTTEEQRQVPSASIVHKEAESTLPVPPSKKTKIPTNEPDVQLNTVVKIMTDQQKHKLSVELEALLGELPESIIDFLKEHSSNSQAGEDEIEIDIDALSDDTLFELRKLLDDYMMEKQERTKVEPCVVELRNESGFSNSSVPPCKGDDPVDEDVDIVGGNDPPVSSYPPIEIEKDAVRRDSKCSNSSSSSSESGSSSSDSGSESLSGSESNAAKALDSNVAPKEILCSETNVDQKQCELGEIEIRNYEESGTGLVEQTTQANTNTIEMDSYQEEGESAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGEKRDPEKVRMEREELERQQREEKARLQAEAKAAEDARRKAEAEAAAEAKKKRELDREAARQALLKMEKTVDINENSQFMEDLEMLRASNDEHLPNFTEESSPEHSQNGFGSFKLQGSNPLEQLGLYMKVDEEDEEDEREPPPQSVNKPANDVEEGEID 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 286116 293083 + Carg10295-RA Car10g00063 154965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00063 780 Pfam Bromodomain 207 291 IPR001487 GO:0005515
Car10g00063 780 MobiDBLite consensus disorder prediction 490 523 - -
Car10g00063 780 Pfam Bromodomain extra-terminal - transcription regulation 358 419 IPR027353 -
Car10g00063 780 ProSiteProfiles Bromodomain profile. 215 287 IPR001487 GO:0005515
Car10g00063 780 Coils Coil 106 126 - -
Car10g00063 780 MobiDBLite consensus disorder prediction 721 740 - -
Car10g00063 780 MobiDBLite consensus disorder prediction 703 780 - -
Car10g00063 780 ProSiteProfiles NET domain profile. 348 429 IPR027353 -
Car10g00063 780 MobiDBLite consensus disorder prediction 706 720 - -
Car10g00063 780 Coils Coil 631 679 - -
Car10g00063 780 MobiDBLite consensus disorder prediction 139 163 - -
Car10g00063 780 MobiDBLite consensus disorder prediction 568 593 - -
Car10g00063 780 MobiDBLite consensus disorder prediction 318 345 - -
Car10g00063 780 MobiDBLite consensus disorder prediction 442 524 - -
Car10g00063 780 MobiDBLite consensus disorder prediction 618 678 - -
Car10g00063 780 MobiDBLite consensus disorder prediction 139 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00063 - - - csv:101217420 1239.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00063 Car11g00042 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01219 Car-Chr3:9493294 Car10g00063 Car-Chr10:286116 4.14E-14 dispersed
Car07g00126 Car-Chr7:785788 Car10g00063 Car-Chr10:286116 2.68E-13 dispersed
Car10g00063 Car-Chr10:286116 Car04g00390 Car-Chr4:2212028 6.92E-57 dispersed
Car10g00063 Car-Chr10:286116 Car11g00042 Car-Chr11:221395 0 wgd
Car10g00063 Car-Chr10:286116 Car11g01325 Car-Chr11:10913021 0 wgd
Car10g00063 Car-Chr10:286116 Car14g00641 Car-Chr14:3575450 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00063 Car_Chr10 FPKM 8.317669 7.967112 16.774137 18.40546 9.216791 9.391802 9.15064 13.458526 13.820937 13.335002