Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00078 ATGGAAGCTCTGGCGCTTCCTTCTATGAATTCTCTCACCATTTCCTGTTCTAATTTGCAGAAAGGGAGTTTCGCCAACTTGCCCGGAACACTGCATCACTGTAAATTTTACGGGCAATCTACCTTAAAGTTCAGGCCCCTTCATGGTACCCGCCACTATCAGTCCAAGATTATCAAAATGCAAAGTGACAGTGAAGACTATGAGCTGAAGCAAATGAGGGACATGGCTGCAGCTAAAAAGAGATGGGACTCTCTGATTCGGGAGGGCAAAGTGAAAGTTCTGACGCCAAGGGAAGCTGGTTATGCCATTCAACTCTCTGATAAGACATTGCTTGATGTGCGTCCTTCTACAGAACACCAAAAGGCATGGGTTAAAGGCTCAACATGGATCCCAATCTTTGAAGTTGATGACAAAGTTGATCCTGGAACTCTTTCTCGAAAGCTTTCCATTCAGAGAAACAAATTACTTTTACTTAGTTTCCTTCTCATGGTTGCTAGGGGTTGGTGGAGTGGTGTGCCTACGGTATCCTACAATAGCCGCTTCTTGTCAGAAGTTCAAGAGAAATTTCCAAAAGATGCTGACCTTATTCTTGCATGTCAAAAGGGATTGAGGTCCCTAGCTGCATGCGAGCTCCTCTACAATGCTGGTTACAAAAACCTCTTCTGGGTTCAAGGGGGTCTAGACGCTGCTGAAGAAGAGGATCTGGCCAGAGAAGGTCCTCAGCCTTTAAAATTTGCTGGGATTGGTGGGCTCTCAGAATTCCTTGGCTGGACCGATCAACAAAGGGTGGCTGGTGCCAAAGAAGGTTGGGGTTATCGCTTGGTCTACTCTGCTCGTCTGATTGCAGTCTTCCTTGCTGCTGATGCCCTGTTTATTGGCGCTCAGCAATTGGGTCGCTATATTCAAGACTTGCGGTCTCACTAA 924 46.43 MEALALPSMNSLTISCSNLQKGSFANLPGTLHHCKFYGQSTLKFRPLHGTRHYQSKIIKMQSDSEDYELKQMRDMAAAKKRWDSLIREGKVKVLTPREAGYAIQLSDKTLLDVRPSTEHQKAWVKGSTWIPIFEVDDKVDPGTLSRKLSIQRNKLLLLSFLLMVARGWWSGVPTVSYNSRFLSEVQEKFPKDADLILACQKGLRSLAACELLYNAGYKNLFWVQGGLDAAEEEDLAREGPQPLKFAGIGGLSEFLGWTDQQRVAGAKEGWGYRLVYSARLIAVFLAADALFIGAQQLGRYIQDLRSH 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 351645 355101 + Carg10310-RA Car10g00078 154980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00078 307 Pfam Rhodanese-like domain 106 229 IPR001763 -
Car10g00078 307 ProSiteProfiles Rhodanese domain profile. 104 239 IPR001763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00078 - - - csv:101221836 513.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00091 Car-Chr3:1189685 Car10g00078 Car-Chr10:351645 4.35E-12 dispersed
Car10g00078 Car-Chr10:351645 Car16g00029 Car-Chr16:249990 1.16E-06 dispersed
Car10g00078 Car-Chr10:351645 Car14g00049 Car-Chr14:285416 1.90E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g860 . . Bda06g00622 . . . . Bma12g01059 . . Cma10g00088 . Car10g00078 . . . . Bhi02g00594 . . . . . . Cla06g01706 Cam06g1894 Cec06g1943 Cco06g1947 Clacu06g1850 Cmu06g1791 Cre06g2606 . Cone16ag0063 . . . . . . . . . . . . . . . Cmo10g00089 . . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01599 Csa01g00099 Chy02g02624 Cme02g02022
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car16g00331 . 59 376 Sulfurtransferasese/Rhodanese AT1G79230 74.5 9.0e-147 516.9
Car04g00480 . 59 378 Sulfurtransferasese/Rhodanese AT1G79230 74.1 5.0e-145 511.1
Car16g00331 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 72.8 5.4e-113 404.4
Car04g00480 . 59 323 Sulfurtransferasese/Rhodanese AT1G16460 72.5 1.0e-111 400.2
Car13g00883 . 35 311 Sulfurtransferasese/Rhodanese AT5G23060 59.4 1.0e-86 317.4
Car18g00024 CST 1225 1501 Sulfurtransferasese/Rhodanese AT5G23060 56.9 1.4e-72 270.4
Car14g01904 CST 1 374 Sulfurtransferasese/Rhodanese AT4G01050 59.9 1.3e-112 404.1
Car06g00864 CST 1 249 Sulfurtransferasese/Rhodanese AT4G01050 56.5 1.7e-67 254.2
Car11g01029 . 43 652 Sulfurtransferasese/Rhodanese AT1G09280 63.6 3.1e-222 768.5
Car04g00984 . 86 450 Sulfurtransferasese/Rhodanese AT2G40760 73.4 4.1e-156 548.5
Car03g00091 . 61 209 Sulfurtransferasese/Rhodanese AT2G42220 71.8 6.7e-59 224.6
Car14g00049 . 35 215 Sulfurtransferasese/Rhodanese AT3G08920 64.1 1.1e-66 250.4
Car10g00078 . 1 307 Sulfurtransferasese/Rhodanese AT4G24750 62.5 2.4e-106 382.5
Car02g01065 . 67 292 Sulfurtransferasese/Rhodanese AT5G19370 64.8 3.8e-83 305.4
Car16g00880 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 72.2 1.2e-147 520.0
Car16g00029 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.6 9.6e-79 290.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011200 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00078 Car_Chr10 FPKM 0.230918 0.0 0.860309 0.835454 2.327785 1.994578 2.633897 1.344051 1.598821 1.445086