Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00079 ATGGCGGCTATTTCCTTAGCTTCCGCTTCTACTTCCTCTAACCTCGTTTTCCTGCATGCCTCTGCTTCTCCCTCTTCCTCCCCTTCTTCTCTCTTCGTCAAACCCTCCTCCTCCTCCTCCTCCGCTATTAAGCTTTCTTCCTCTTTCTTGAACCCTTCTTCTATTCGCCCTCTCACCTTCTCCTCCCCCGCTGTAAACCCTCCTCGTTCCTTGACGATTCGGGCCGCCCGTGGGAAATTTGAGAGGAAGAAACCCCATGTCAATATCGGCACAATTGGGCATGTCGACCATGGTAAAACCACGCTCACCGCCGCTTTGACAATGGCTTTGAGCAAAGCCCCAAAGAAATATGACGAAATTGACGCCGCACCTGAAGAGCGAGCTCGGGGTATTACGATAAACACCGCCACCGTTGAGTACGAAACTGAGAGCCGACATTACGCCCACGTTGATTGCCCTGGCCATGCTGATTACGTCAAGAACATGATTACTGGTGCTGCTCAAATGGATGGCGCAATTTTGGTGGTTTCGGGCGCTGATGGCCCAATGCCACAAACGAAGGAGCATATTTTGTTGGCTAAACAAGTGGGTGTCCCCAATATGGTGGTGTTTCTCAACAAGAAGGATCAAGTTGATGACGAGGAGCTTCTGGAGCTTGTGGAATTGGAAATGCGTGAGTTGCTTTCTTCCTATGAATTCCCTGGTGATGATGTCCCAATTATTGCTGGTTCTGCTTTGTTAGCTTTGGAAGCTCTAATGGCTAACCCTGGTATTGTTAGAGGCGAAAATGAATGGGTGGATAAAATTTTTGAACTTATGGATGCTGTTGATAGCTACATTCCAATACCCGAAAGACAAACAGATCTTCCATTTTTGCTTGCTGTTGAAGATGTGTTCTCTATTACTGGTCGTGGTACTGTGGCGACCGGGCGTGTCGAAAGGGGCACGGTTAGGGTGGGAGAAACAGTGGATATTGTAGGACTAAGGGAAACTAGAAACACAACAGTGACAGGAGTGGAGATGTTTCAGAAAATTCTTGACGAGGCTTTGGCTGGGGATAATGTAGGGCTGTTGCTTAGAGGCGTTCAGAAGGCTGACATCCAAAGAGGGATGGTTCTAGCCAAGCCTGGCACTATCACCCCACACACCAAGTTTCTTGCAGTTGTGTATGTGTTGAAGAAGGAGGAGGGTGGTAGACATTCACCCTTTTTTGCCGGATACAGACCGCAATTTTACATGAGGACGACCGATGTCACAGGTAAGGTGACTTCGATTATGAACGACAAGGACGAGGAGTCGAAAATGGTGATGCCGGGTGACCGAGTTAAAATGGTTGTGGAACTGATTATGCCAGTGGCTTGTGAACAAGGAATGAGATTTGCCATCAGAGAAGGTGGAAAGACTGTAGGAGCTGGTGTGATTCAATCAATAATTGAGTGA 1440 47.99 MAAISLASASTSSNLVFLHASASPSSSPSSLFVKPSSSSSSAIKLSSSFLNPSSIRPLTFSSPAVNPPRSLTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALSKAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKKDQVDDEELLELVELEMRELLSSYEFPGDDVPIIAGSALLALEALMANPGIVRGENEWVDKIFELMDAVDSYIPIPERQTDLPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVDIVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAVVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 359965 361404 + Carg10311-RA Car10g00079 154981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00079 479 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 121 136 IPR031157 -
Car10g00079 479 Pfam Elongation factor Tu C-terminal domain 378 477 IPR004160 -
Car10g00079 479 Hamap Elongation factor Tu [tuf]. 75 479 IPR004541 GO:0003746|GO:0005525|GO:0006414
Car10g00079 479 Pfam Elongation factor Tu domain 2 305 373 IPR004161 GO:0005525
Car10g00079 479 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 84 284 IPR000795 GO:0003924|GO:0005525
Car10g00079 479 Pfam Elongation factor Tu GTP binding domain 84 281 IPR000795 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00079 K02358 tuf, TUFM; elongation factor Tu - csv:101202988 831.247
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00079 Car11g00058 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00322 Car-Chr8:2069413 Car10g00079 Car-Chr10:359965 9.54E-177 dispersed
Car10g00079 Car-Chr10:359965 Car17g01090 Car-Chr17:8455055 3.12E-175 dispersed
Car10g00079 Car-Chr10:359965 Car11g00058 Car-Chr11:326497 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g834 Blo04g00717 . . . . . Bma06g00224 . . . Cma10g00090 Cma11g00064 Car10g00079 Car11g00058 Sed08g0074 . Cpe04g01586 Bhi02g00598 Tan09g2310 Cmetu02g0003 . . . . Cla06g01704 Cam06g1892 Cec06g1941 Cco06g1945 Clacu06g1848 Cmu06g1789 Cre06g2604 Cone2ag0932 Cone16ag0071 . . . . . . . . . . . Bpe15g00654 Bma03g00766 . . Cmo10g00093 Cmo11g00067 . . . . . Cpe18g00872 . . . . . . . . . . . . . . Lsi06g01592 . . Cme02g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006341 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00079 Car_Chr10 FPKM 17.89308 26.344191 26.831245 25.112085 2.472692 2.712406 3.569865 16.256901 16.206057 16.987862