Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00080 ATGGCGTCCATAGTCGCTTGCCTTCCCAATATATCTGTAACTTCCATAACCCACCTTTCCCAGTTCCCTGAGAATCCAAAATCTTTGATTCTTCAGAGATGCAAAACTCCCAAAGACCTCCGTCAAGTTCACGCTCACCTTCTCAAAACTCGCCGTCTTCAAGACCCCACCATTGCAGAAGCCGTTCTCGAGTCCGCAGCTTTGCTTCTTCCCAACTCCATAGACTATGCCCTTTCCATTTTCAATCACATGGACAAACCTGAATCGTCGGCTTACAATGTTATGATCAGGGGCCTTGCCTTCAAGCAATCGCCTCATAACGCCGTTCTCCTGTTCAAGAAAATGCATGAAAACTCGGTTCAACACGACAAATTCACTTTCTCCTCTGTCTTAAAGGCTTGCTCTAGAATGAGAGCGCTGAGGGAAGGCGAACAGGTCCACGCGCTCATTCTGAAATCTGGGTTCAAATCAAATGAGTTTGTTGAAAATACTTTGATTCATATGTATGCGAATTGTGGACAAGTTGGGGTTGCACGTCAGGTGTTTGATGGAATGTCGCAACGAGCAACAGTTGCGTGGAATTCAATGTTGTCTGGTTACACGAAGAATGGGCTTTGGGATGAGGTCGTGAAACTCTTTCGAAAAATGCTGGAACTCCATATTGAATTTGATGATGTTACAATGATTAGCGTGTTAATGGCTTGTGGAAGATTAGCGGATCTGGAATTGGGTGAGTTGATTGGTGAGTATATTTTGTCAAAAGGGATAAGAAGAAACAGTACTCTAACAACTTCGCTAATTGATATGTATGCCAAATGTGGCCAAGTCGACACTGCTCGAAAGTTGTTCGATGAAATGGATAAAAGAGATGTCGTTGCGTGGAGCGCGATGATCTCAGGGTACGCGCAAGCCGATCGATGTAAAGAAGCTCTTGATCTGTTCCATGAGATGCAGAAGGCAAAAGTGGATGCAAATGAGGTAACAATGGTCAGTGTTCTGTATTCATGCGCCGTACTTGGAGCATACGAAACCGGTAAGTGGGTTCATTCCTACATAAAAAGGAAGAAGATGAAGCTCACTGTTAGTCTTGGAACACAGCTGATAGATTTCTATGCTAAATGTGGGTACATAGATAGGTCAGTTGAAGTTTTCAGGGCAATGCCTTTCGCAAATGTCTTCACATGGACAGCACTAATTCAGGGTCTTGCCAATAATGGGGAGGGGAAAATGGCTCTGGACTTCTTTGCTTTGATGCGAGAGAACAATGTAAAGCCGAATGATGTAACTTTCATTGCTGTTCTTTCTGCTTGTAGCCATGCTTGTCTGGTTGATCAGGGCCGACATCTTTTCAATAGCATGAGAAGGGGTTTTGATATTGAGCCAAGGATTGAGCATTATGGCTGCATGGTTGATATTCTTGGACGAGCTGGGCTACTCGAAGAAGCCTATCAGTTTATTGCTAACATGCCCATCCCACCCAATGCTGTTGTTTGGAGGACACTTTTGGCTTCATGCAAAGCTCATAAAAACGTTGAAATGGCAGAAAAATCATTTGACCACATTACTCTCTTGGAGCCTGCTCACAGTGGAGATTACATTCTTCTGTCAAATACTTATGCTTTGGTTGGTAGGGTTGAGGATGCACTCAGGGTGAGATCTCTGATAAAAGATAAGGAGATTAAGAAGACACCGGGTTGTAGTTTGATCGAGCTCGATGGTGTAGTACATGAGTTTTTTTCTGAAGATGGAGATCATACTCACTCTAAGGAAATACACGATGCATTAGATGAAATGATGAAGCGGATTAAGTCACTCGGATATGTGCCCAACATGGAGGATGCTAGACTAGAGGCTGAAGAAGAGGAGAGTAAAGAAACTTCGGTGTCGCATCATAGCGAGAAGCTAGCTATTGCTTATGGTCTTATTCGTACACCTCTTCAAACCACCATTAGAATTTCAAAAAATCTAAGGATGTGCAGGGACTGTCACAATGCAACCAAGGTCATATCACAAGTCTATAAAAGAACAATCATCGTTAGAGATCGTAACCGTTTTCATCATTTTAAAGACGGTCTTTGCTCCTGTAATGACTATTGGTAA 2100 43.1 MASIVACLPNISVTSITHLSQFPENPKSLILQRCKTPKDLRQVHAHLLKTRRLQDPTIAEAVLESAALLLPNSIDYALSIFNHMDKPESSAYNVMIRGLAFKQSPHNAVLLFKKMHENSVQHDKFTFSSVLKACSRMRALREGEQVHALILKSGFKSNEFVENTLIHMYANCGQVGVARQVFDGMSQRATVAWNSMLSGYTKNGLWDEVVKLFRKMLELHIEFDDVTMISVLMACGRLADLELGELIGEYILSKGIRRNSTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALDLFHEMQKAKVDANEVTMVSVLYSCAVLGAYETGKWVHSYIKRKKMKLTVSLGTQLIDFYAKCGYIDRSVEVFRAMPFANVFTWTALIQGLANNGEGKMALDFFALMRENNVKPNDVTFIAVLSACSHACLVDQGRHLFNSMRRGFDIEPRIEHYGCMVDILGRAGLLEEAYQFIANMPIPPNAVVWRTLLASCKAHKNVEMAEKSFDHITLLEPAHSGDYILLSNTYALVGRVEDALRVRSLIKDKEIKKTPGCSLIELDGVVHEFFSEDGDHTHSKEIHDALDEMMKRIKSLGYVPNMEDARLEAEEEESKETSVSHHSEKLAIAYGLIRTPLQTTIRISKNLRMCRDCHNATKVISQVYKRTIIVRDRNRFHHFKDGLCSCNDYW 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 362851 364950 + Carg10312-RA Car10g00080 154982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00080 699 Pfam E motif 508 570 IPR046848 -
Car10g00080 699 Pfam DYW family of nucleic acid deaminases 606 699 IPR032867 GO:0008270
Car10g00080 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 289 IPR002885 -
Car10g00080 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Car10g00080 699 Pfam PPR repeat family 289 336 IPR002885 -
Car10g00080 699 Pfam PPR repeat family 391 438 IPR002885 -
Car10g00080 699 Pfam PPR repeat family 88 135 IPR002885 -
Car10g00080 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 157 IPR002885 -
Car10g00080 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Car10g00080 699 Pfam PPR repeat 465 489 IPR002885 -
Car10g00080 699 Pfam PPR repeat 163 187 IPR002885 -
Car10g00080 699 Pfam PPR repeat 191 219 IPR002885 -
Car10g00080 699 Pfam PPR repeat 366 388 IPR002885 -
Car10g00080 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00080 - - - cmax:111484844 1350.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00657 Car-Chr5:4074038 Car10g00080 Car-Chr10:362851 5.30E-148 dispersed
Car10g00080 Car-Chr10:362851 Car13g00046 Car-Chr13:370491 1.79E-43 dispersed
Car18g01040 Car-Chr18:10726171 Car10g00080 Car-Chr10:362851 5.05E-115 dispersed
Car18g01121 Car-Chr18:11192293 Car10g00080 Car-Chr10:362851 4.83E-47 dispersed
Car10g00080 Car-Chr10:362851 Car06g00178 Car-Chr6:1088442 5.96E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g828 . . . . . . . . . . Cma10g00091 . Car10g00080 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00094 . . . . . . Cpe18g00871 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014075 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00080 Car_Chr10 FPKM 12.62547 13.920701 3.891468 3.001028 17.977806 19.017328 19.149752 3.734195 3.814456 2.45303