Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00082 ATGGCCATGGATCCGAACCCCAAAAGTTTCCCCATCCTTTCCTACGTCATGGCTAGAATCCCCTCTCTCAGTCCCCGACCGCCGGCCGTCGAATTCGATATCGAACAGCCTGCATCTCCGCCGTCCCGCCACGCTGCGAAAAATCCTTCCGATCCATCCTCTTCCTCCTCCCAAATCGTCGATGACATGCCCCATCTATCGGACCCTAAGGTATTGGCTTCTATGACCAGCGCCATCTCTGATGTTGCTCAGACCCGATCCATCCTCAAAACCCTTGGGGAGAGACCAGATCATGAGGCTATCGATACTGCCAAGGCTAAGCTCGCTGATGTAGAAGCCAATTTGTCTGCCAAGCTTCAGGAAATCGTGCTTTCGCCTAGGCCGGCAGATGTGGAGATGCTTGAGTGGAGGGCGCTTCTTGCTGAGAGAGAGAACGAGTGCCGGCAGGCGGCGGATAAAGAGAAGCAGCTGTATAATGCAATTGTGCAACTGGATGAGATGCACGAGGCGTATGCGAAGATGTTAAAGGAAGCGGAGCAAAGGTTGGTGAAGATTTACGAATCGGCGGAGAGAGGGCTGCAGGAGGAAAAATTGGATCCAGTAAGCGAGGAGACCAATGAGGAGGTTGCGAGGATTCTTCAGGAAGCGAATGAGAAGGAAATAGATCGAATTAATCTCTCCAGCCGACGCTTGCAGTTCTTGCCTGAAGAATTTGGACGCATTCGGGGATTGGTTGTGCTTGATATCTCCAGCAATCAACTACAGAATATCCCGGATTCAATATCTGGCTTAGAAAATCTTGAGGAGCTGAATGCCTCATCCAATCTCTTGGAGTCACTGCCGGACACGATTGGCTTATTACAAAAGCTGAAACTCCTGAATGTCTCTGGGAACACGTTGCAAGCCCTTCCTGACTCAATATGCCATTGCAGGTCTTTGGTGGAGTTAGATGTGAGCTTCAACGCTCTAACGTACTTGCCAACAAATATTGGCCATGAATTGGTGAATTTGGAGAAGCTTTCTATCCAGTTGAACAAGATACGTTCACTGCCATCTTCTTTTTGTGATATGATCTCTTTGCGTTACCTGGATGCTCATTTCAACGAGCTTCATGGCCTTCCTCAGGCAATTGGGAAATTGACACAACTTGAATATCTCAACCTAGCCAGTAATTTTACTGACCTTACTGAACTTCCACACACCTTTGGTGATTTATCCAGCCTTAGGGAACTTGATCTTAGCAACAACCAGATTCACGCTCTACCTGATACATTCGGCCATCTTGAGAATTTAGAGAAACTAAACTTGGAGCAAAATCCTCTTGTAATTCCGCCAATGGAAGTGGTAAATAGTGGACTGGATGCTGTGAGGACATTCATGTCCAAGAGGTGGCTTGAAATTCTGGAGGAGGAAGATAGAAAAAGAACTCTTGAAATGGACGAACAGGTGCAGACTGGATGGCTGACGCGAAGTACCACTTGGTTGAAGTCTTACATTTCTGGGGTTTCAGAGACCGTGTCTGGTATTGTTGGATCTCCCAACAGTCCGAAAGACCCTTATCTCGAACAGCAGCTATAA 1578 47.78 MAMDPNPKSFPILSYVMARIPSLSPRPPAVEFDIEQPASPPSRHAAKNPSDPSSSSSQIVDDMPHLSDPKVLASMTSAISDVAQTRSILKTLGERPDHEAIDTAKAKLADVEANLSAKLQEIVLSPRPADVEMLEWRALLAERENECRQAADKEKQLYNAIVQLDEMHEAYAKMLKEAEQRLVKIYESAERGLQEEKLDPVSEETNEEVARILQEANEKEIDRINLSSRRLQFLPEEFGRIRGLVVLDISSNQLQNIPDSISGLENLEELNASSNLLESLPDTIGLLQKLKLLNVSGNTLQALPDSICHCRSLVELDVSFNALTYLPTNIGHELVNLEKLSIQLNKIRSLPSSFCDMISLRYLDAHFNELHGLPQAIGKLTQLEYLNLASNFTDLTELPHTFGDLSSLRELDLSNNQIHALPDTFGHLENLEKLNLEQNPLVIPPMEVVNSGLDAVRTFMSKRWLEILEEEDRKRTLEMDEQVQTGWLTRSTTWLKSYISGVSETVSGIVGSPNSPKDPYLEQQL 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 369743 373371 - Carg10314-RA Car10g00082 154984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00082 525 PANTHER LEUCINE-RICH REPEAT-CONTAINING 4 509 - -
Car10g00082 525 Coils Coil 202 222 - -
Car10g00082 525 SMART LRR_sd22_2 405 433 - -
Car10g00082 525 SMART LRR_sd22_2 334 365 - -
Car10g00082 525 SMART LRR_sd22_2 241 266 - -
Car10g00082 525 ProSiteProfiles Leucine-rich repeat profile. 243 264 IPR001611 GO:0005515
Car10g00082 525 Pfam Leucine rich repeat 222 277 IPR001611 GO:0005515
Car10g00082 525 Pfam Leucine rich repeat 311 370 IPR001611 GO:0005515
Car10g00082 525 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515
Car10g00082 525 Gene3D Ribonuclease Inhibitor 332 458 IPR032675 -
Car10g00082 525 ProSiteProfiles Leucine-rich repeat profile. 407 428 IPR001611 GO:0005515
Car10g00082 525 SUPERFAMILY L domain-like 219 442 - -
Car10g00082 525 ProSiteProfiles Leucine-rich repeat profile. 266 287 IPR001611 GO:0005515
Car10g00082 525 MobiDBLite consensus disorder prediction 46 62 - -
Car10g00082 525 MobiDBLite consensus disorder prediction 26 64 - -
Car10g00082 525 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 4 509 - -
Car10g00082 525 PRINTS Leucine-rich repeat signature 244 257 - -
Car10g00082 525 PRINTS Leucine-rich repeat signature 405 418 - -
Car10g00082 525 Gene3D Ribonuclease Inhibitor 141 325 IPR032675 -
Car10g00082 525 SMART LRR_bac_2 380 401 - -
Car10g00082 525 SMART LRR_bac_2 264 283 - -
Car10g00082 525 SMART LRR_bac_2 334 353 - -
Car10g00082 525 SMART LRR_bac_2 310 329 - -
Car10g00082 525 SMART LRR_bac_2 243 260 - -
Car10g00082 525 SMART LRR_bac_2 287 306 - -
Car10g00082 525 SMART LRR_bac_2 359 376 - -
Car10g00082 525 SMART LRR_bac_2 405 424 - -
Car10g00082 525 SMART LRR_typ_2 405 427 IPR003591 -
Car10g00082 525 SMART LRR_typ_2 287 310 IPR003591 -
Car10g00082 525 SMART LRR_typ_2 357 379 IPR003591 -
Car10g00082 525 SMART LRR_typ_2 311 333 IPR003591 -
Car10g00082 525 SMART LRR_typ_2 334 356 IPR003591 -
Car10g00082 525 SMART LRR_typ_2 380 404 IPR003591 -
Car10g00082 525 SMART LRR_typ_2 264 286 IPR003591 -
Car10g00082 525 SMART LRR_typ_2 428 451 IPR003591 -
Car10g00082 525 SMART LRR_typ_2 241 263 IPR003591 -
Car10g00082 525 Coils Coil 161 181 - -
Car10g00082 525 Coils Coil 101 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00082 - - - csv:101222309 859.366
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00082 Car11g00062 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01794 Car-Chr4:10277918 Car10g00082 Car-Chr10:369743 2.42E-22 dispersed
Car10g00082 Car-Chr10:369743 Car18g00700 Car-Chr18:8221318 3.85E-146 dispersed
Car10g00082 Car-Chr10:369743 Car11g00062 Car-Chr11:338012 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00082 Car_Chr10 FPKM 17.217167 18.318945 46.037273 49.567326 41.401875 45.180737 44.644402 44.819901 47.027264 46.970921