Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00085 ATGAATAGAAATCATAAGGCAAGAGCCGTTCTTCTTACTGCTATCGAAGTGTTCATGATTCTTCTATGTGCTGGTTGGGTTTCTCTGTGGCTATTGAAACCCACAGATCTCTGGACAAGAAAATGGCGTGTTGCTGAAAACACTGCCCGAGCATCTGTATTTGGATACTATGGTATGCAAACGAAGTTTTCAACCTTTTCCAATACTCTTTCGAACCCACTTGTTGTGAACAGCTATGTGGGTATTTTATCTGGAATTGAGCTTCTGGGTGTTGCTTTGTTTCTCCTCTTCCTGGCTTGGACGTTCTATGCTCGAATATCCAAAGATTTCAGAAAGTTGATGCCCGAAGAATCACTCAACTTGAAGATATGGGAACTCAAGTATTTAAGAGTAGCCACCAGGTTTGGTTTGCTAGCAGAGGCCTGTTTGGGGCTGCTTCTTCTGCCTGTCTTGAGAGGGTTGGCTCCATTTCGGCTAATTGGCATTCAGTTTGAAGCTTCAGTGAAGTATCACGTCTGGCTTGGCACTGCAATGGTGTTGTTTGGCACCTTCCATGGCGCCAGCACCTTGTTCATCTGGGGGATCAGCAACCAGATTCAAGATCAGGTGTGGAAATGGCAGAACACCGGCCGGATTTACATCGCCGGGGAGATTACTTTGATTACAGGATTAGTGATTTGGATCACTTCCTTGCCTCAGATAAGGAGAATCAAATTTGAGATCTTCTACTACACACACCATTTATACATTGTCTTTTTTGTGTTCTTCCTGTTTCATGCTGGAGATAGACACTTTTACATGGTATTTCCTGGACTGTTTCTCTTCGCCATTGATAAGATCCTCCGAATTATTCAGTCTAGAACCGAAACGTGTGTCGTCTCGGCTCGAGTCCTCCCCTGCAAAGCTGTGGAACTAACTCTGCCAAAAGACCAGAGGCTGAAGTATAAACCAACTAGCGTTGTGTATGTGAAGATACCAAGGATTTCCAGATTTGAGTGGCATGCTTTCAGCTTGATTTCCAGCTCGAGTGTTGATGATGAAACAATGTCGATCGTCATTAAATGTAATAAGTCATGGACGAAGTCTTTGTATGAGATAATCAACACCGAACGAGAGGGAGAGTCGGATCAGTTGAAGTGCATCTCCGTTGCAGTCGAGGGCCCTTATGGACCTGCCTCCTTGGACTTCCTAAGATATGATCACTTGATTCTGATTGCTGGAGGAATTGGAGTAACCCCACTTTTGAGCATTTTACAGGAGATCACTTCTATGAAGAACACTAAATTCATCTGCCCTGCAAGAATCCAGCTTATACATGTCATGAAAAAGTCCCACGAGATTGCGCTACTCAGCTCAATCTTACCTTTACTACTGAAACGCTTGGATGGAAAAATGCATTTGCAGCTCAAAGTATTCGTGACACAAGAACTGCAATCCGGTTCAACTCTAACCGAACTGCTAAACAAGTTCTCTCAAATGCAGACGATACAATCGAGCGTGAACCGTTCAAGCTATGCAGCACATGGGCTTGAAAGCTTAGGCTGGATGGCTGTAATTACTGGACTGATATCAATCGTGTTCTCTGTCGCCCTTATCGTCTTCAACCATATCGTCATTCCAACCAAGAAAGCCTCCAAAAAGACAAAAGACAGAACCCCATCTTGGATCTCGGATCTTCTTCTGATGTCTTCCTTCGCTTTAGCTATCTTATCCGGGGCGGTCGTCGGGATTGTTTTACGACGGAGAAGACTGAAGAAAGGAAATCTAGCACCCATCCAAAGCCAAAACCAAACCAAGAACACAACTCCAAGTTCAGTAGCAAGAGGAAGTAGACAAGAAGAACATGAAATATATTTTGGAGAAAGGCCTAACTTCATAGAGATATTCTCCAACATCAACAACCCGGCAAGCGAATCGGACATCGGCGTGATCAGCAGTGGACCAGAGGCAATGAACTTGTCAGTAGCCAAAGCTTGTAAGCAAATGTCTGGAGGTTCAAGGAAAGGCTCAAAGAAGAACAAACAGCAATTCAGTTTCCATTCCCTCAACTTCACTCTCTGA 2061 44.1 MNRNHKARAVLLTAIEVFMILLCAGWVSLWLLKPTDLWTRKWRVAENTARASVFGYYGMQTKFSTFSNTLSNPLVVNSYVGILSGIELLGVALFLLFLAWTFYARISKDFRKLMPEESLNLKIWELKYLRVATRFGLLAEACLGLLLLPVLRGLAPFRLIGIQFEASVKYHVWLGTAMVLFGTFHGASTLFIWGISNQIQDQVWKWQNTGRIYIAGEITLITGLVIWITSLPQIRRIKFEIFYYTHHLYIVFFVFFLFHAGDRHFYMVFPGLFLFAIDKILRIIQSRTETCVVSARVLPCKAVELTLPKDQRLKYKPTSVVYVKIPRISRFEWHAFSLISSSSVDDETMSIVIKCNKSWTKSLYEIINTEREGESDQLKCISVAVEGPYGPASLDFLRYDHLILIAGGIGVTPLLSILQEITSMKNTKFICPARIQLIHVMKKSHEIALLSSILPLLLKRLDGKMHLQLKVFVTQELQSGSTLTELLNKFSQMQTIQSSVNRSSYAAHGLESLGWMAVITGLISIVFSVALIVFNHIVIPTKKASKKTKDRTPSWISDLLLMSSFALAILSGAVVGIVLRRRRLKKGNLAPIQSQNQTKNTTPSSVARGSRQEEHEIYFGERPNFIEIFSNINNPASESDIGVISSGPEAMNLSVAKACKQMSGGSRKGSKKNKQQFSFHSLNFTL 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 382462 385482 - Carg10317-RA Car10g00085 154987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00085 686 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 285 395 IPR017927 GO:0016491
Car10g00085 686 MobiDBLite consensus disorder prediction 589 612 - -
Car10g00085 686 Pfam Ferric reductase NAD binding domain 399 659 IPR013121 GO:0016491
Car10g00085 686 MobiDBLite consensus disorder prediction 589 608 - -
Car10g00085 686 Pfam FAD-binding domain 293 393 IPR013112 GO:0016491
Car10g00085 686 Pfam Ferric reductase like transmembrane component 136 256 IPR013130 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00085 K00521 E1.16.1.7; ferric-chelate reductase [EC:1.16.1.7] - csv:101203723 1102.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01345 Car-Chr4:7791270 Car10g00085 Car-Chr10:382462 2.55E-91 dispersed
Car10g00085 Car-Chr10:382462 Car02g01190 Car-Chr2:8096251 3.90E-21 dispersed
Car10g00085 Car-Chr10:382462 Car11g00953 Car-Chr11:6222897 9.42E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g813 . . . . . . . . . . Cma10g00097 . Car10g00085 . . . . . . . . . . . . . . . . . . Cone2ag0929 Cone16ag0077 . . . . . . . . . . . . . . . Cmo10g00100 . . . . . . Cpe18g00866 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011006 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00085 Car_Chr10 FPKM 0.715816 1.454094 0.0 0.0 0.289868 0.215638 0.158946 0.071033 0.0 0.0