Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00086 ATGGAAGAGGAGTTTCAAGGAAGGCCAGCTGAGTTACAACTGCAATGCTGCAGTGCAAGGATCATGTCACCGGAGATCGTCGAGATTGGAGACGAAAGTAAGACTATTATCAGTAGCAGTGACCGTGGTGCAACCGATGTCTATGTCGCCGTTGGTAAAGATGATATAGATGTGCTTAAATGGGCCCTTGATCATGCTGTCTCACCTGGTTGTTGTGTTTTTCTTATCCATGTTTTTCCTCCTCTCACCTACATCCCTACTCCAGTTGGAAGATTAGCAAGGAGTCAACTGAGCCAAGAACAACTGAGAGTGTACATCAATGAGGAAAACAATAGAAGGAGAAATCTCTTGCAAAAGTACATCCGGTTATGCACTGACGCCAAGGTGACAGTGGACACATTGCTTCTGGAGAGCAACACGACAGCCAAAGCAATCCTTCAACTAATTCCAGTGCTCAACATCACCAATTTAGTCATAGGAACCAAAAATCCACTTTCCACAAGGCTATTGGGGAAAAGAATGGCGAAAGGAGAGTTTGTGAAAAAGAATGCACCAGAATGTTGCGAGGTTACCATTGTTTATGAAGGCAAAAAGGTCGATGAGCGTCACCAGGAAATGGGGTTGCTTCCTTCTTCTCAAAACTCCGGTTGCCGTCGCCGGCGCTCCGGCAAGAACTTGTTCGAGTGTGTGTGCTTGTTCAGCAGCCCGTGTATCAGAGTCATGAATCCTTACGACCATAGATACGCCGATCCCAATTCCTACCGCGAGCGCCGAAGTGACCTAGTCGGTCCACAGCCTGCTGCGCCGCCGCCGATAGCAGGGCGTGAATCTATGTACAAAGGCTTTCATCCTCCTCCAGTACCATATTATGGCCGTGAAAGAGGTGGGGGAGGTGCTTTACCTAATGCTGGAGGTTTTAATGGCTTCCCGCGGTTTCAGCCTCCCGCAGGACCGTTCAATATCGGTCGCAGTGGCAATGATTTCGGTAGCGGCGGAAGGAGAATGTTTGATTCTGGGAGGGGCGGGAATATGGGTTTTGGAGGTAGACGTGGTGGAGGAACGGGATTTGAGGGGCGTGTTGGCGGAAGTGGGGCTGGACGTGGTGGTTCATCAAGAGGGGACTTAGATAACATAGTTCTTCCGAGTCAGAATTTTGGGGATTTGGTCCCTTTTGAAAAGAACTTCTACACTGAGTGTCCTTCTGTGCGAGCAATGACGGAGTCCGAAGTCAAGATGTACAGAGAGAGGCGTGATATTAGAGTGGAAGGATACGATGTCCCAAAACCAATTCGGAGTTTTCAGGAGGCAAATTTTCCTGCTTACTGCCTTGATGTGATTGCGAAATTGGGATTTGTTGAACCAACACCAATTCAGGCTCAAGGATGGCCCATGGCCATGAAAGGAAGAGATTTGATTGGCATTGCTGAAACTGGCTCTGGGAAGACTCTGGCTTATCTACTGCCAGCTTTAATACACATTAGTGCCCAGCCTCGTTTGGTGCATGGTCAAGGTCCCATTGTATTGGTGTTAGCGCCCACCAGAGAATTAGCTGTTCAAATTCAACAAGAGGTCACTAAATTTGGGTTGCGTGCTAATATTAGAAGTACTTGCATTTATGGTGGGGCTCCTAAGGGCCCTCAAATTCGTGATCTCAAAAATGGTGTTGAGATTGTTATTGCTACACCTGGTCGGCTCATAGATATGCTGGAAGCTGGCCACACAAACCTGCAGCGAGTTACTTATCTTGTTTTGGATGAAGCTGATAGAATGCTGGACATGGGATTTGAGCCTCAAATAAGGACAATCGTGAGCCAAATCCGACCTGATAGGCAGACATTATATTGGAGTGCCACATGGCCAAGGGAGGTTGAAAAATTGGCTAGGCAATTTTTACATAATGCGTATAAGGTGATTATTGGTTCATCAGATCTTAAAGCTAACCAGTCAATAAACCAAGTCGTCGAAGTTTTACCAGAGGCTGAGAAATATAGAAGGTTAATAAAATTGCTTGTAGAAGTGATGGATGGTAGCCGTATTCTGATTTTTGTGGAGACAAAAAAGGGATGTGATAAAGTAACAAGGCAATTGAGAATGGATGGATGGCCAGCTCTATCCATTCATGGGGATAAAAAGCAGGCTGAAAGGGACTTGGTTTTGTCCGAGTTTAAGAGTGGAAGAAACCCAATAATGACAGCCACTGATGTGGCTGCAAGAGGGCTTGATGTGAAAGATATAAAATGTGTGATCAACTATGATTTCCCATCAAGCCTCGAGGATTATGTCCACAGAATAGGCCGAACGGGGCGTGCTGGTGCGAAGGGAACTGCATTCACATTCTTTACTCATGAGAATGCGAAACACGCCAGAGAGCTTATAAAGATACTGCGAGAAGCAGGGCAGATCGTCTCCCCTGCATTGTCTGCTTTAGCCTCGTCTAGTGCCACTGGAGGTTCTAGCTCTAAATACCGCCCTCAAGGTCACAGAGGCTTTGGTGGTAACCGAACAATGGTTTCAGGACCAAATGCGATCCCTATTGGTTTGACGAGACCAAGGCCTCGCTAG 2562 46.84 MEEEFQGRPAELQLQCCSARIMSPEIVEIGDESKTIISSSDRGATDVYVAVGKDDIDVLKWALDHAVSPGCCVFLIHVFPPLTYIPTPVGRLARSQLSQEQLRVYINEENNRRRNLLQKYIRLCTDAKVTVDTLLLESNTTAKAILQLIPVLNITNLVIGTKNPLSTRLLGKRMAKGEFVKKNAPECCEVTIVYEGKKVDERHQEMGLLPSSQNSGCRRRRSGKNLFECVCLFSSPCIRVMNPYDHRYADPNSYRERRSDLVGPQPAAPPPIAGRESMYKGFHPPPVPYYGRERGGGGALPNAGGFNGFPRFQPPAGPFNIGRSGNDFGSGGRRMFDSGRGGNMGFGGRRGGGTGFEGRVGGSGAGRGGSSRGDLDNIVLPSQNFGDLVPFEKNFYTECPSVRAMTESEVKMYRERRDIRVEGYDVPKPIRSFQEANFPAYCLDVIAKLGFVEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALIHISAQPRLVHGQGPIVLVLAPTRELAVQIQQEVTKFGLRANIRSTCIYGGAPKGPQIRDLKNGVEIVIATPGRLIDMLEAGHTNLQRVTYLVLDEADRMLDMGFEPQIRTIVSQIRPDRQTLYWSATWPREVEKLARQFLHNAYKVIIGSSDLKANQSINQVVEVLPEAEKYRRLIKLLVEVMDGSRILIFVETKKGCDKVTRQLRMDGWPALSIHGDKKQAERDLVLSEFKSGRNPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALASSSATGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 387970 393927 + Carg10318-RA Car10g00086 154988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00086 853 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 462 637 IPR014001 -
Car10g00086 853 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 665 810 IPR001650 -
Car10g00086 853 Pfam DEAD/DEAH box helicase 455 626 IPR011545 GO:0003676|GO:0005524
Car10g00086 853 Pfam Helicase conserved C-terminal domain 661 771 IPR001650 -
Car10g00086 853 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 583 591 IPR000629 -
Car10g00086 853 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 431 459 IPR014014 GO:0003724
Car10g00086 853 MobiDBLite consensus disorder prediction 255 280 - -
Car10g00086 853 MobiDBLite consensus disorder prediction 812 853 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00086 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - csv:101203955 1010.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00053 Car-Chr1:291925 Car10g00086 Car-Chr10:387970 0 dispersed
Car07g00310 Car-Chr7:1589719 Car10g00086 Car-Chr10:387970 6.83E-36 dispersed
Car10g00086 Car-Chr10:387970 Car14g01384 Car-Chr14:11643573 6.32E-141 dispersed
Car13g00237 Car-Chr13:4355010 Car10g00086 Car-Chr10:387970 1.11E-30 dispersed
Car14g01117 Car-Chr14:9888961 Car10g00086 Car-Chr10:387970 9.14E-17 dispersed
Car14g01119 Car-Chr14:9893425 Car10g00086 Car-Chr10:387970 6.10E-73 dispersed
Car01g00253 Car-Chr1:1413317 Car10g00086 Car-Chr10:387970 1.28E-131 transposed
Car09g00020 Car-Chr9:115351 Car10g00086 Car-Chr10:387970 1.98E-129 transposed
Car10g00086 Car-Chr10:387970 Car11g01364 Car-Chr11:11163729 1.67E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g811 . . . . . . . . . . Cma10g00099 . Car10g00086 . . . . Bhi02g00510 . . . . . . Cla06g01693 Cam06g1881 Cec06g1928 Cco06g1933 Clacu06g1837 Cmu06g1779 Cre06g2594 Cone2ag0927 . . . . . . . . . . . Bpe07g00856 . . . . Cmo10g00101 . . . . . . Cpe18g00865 . . . . . . . . . . . . . . Lsi06g01588 . Chy02g02611 Cme02g02008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011968 0 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00086 Car_Chr10 FPKM 3.591661 4.828868 0.446374 0.936203 0.518392 0.535507 0.51994 0.271078 0.135644 0.302533