Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car10g00093 | ATGGCATCATCAAGTTCTTACAACTCTCCTTGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGTCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAGATCTTTGGGGCCAGCAATGTGACAAAGCTGCTGAATGAACTTCTGCCTCACCAAAGAGAGGATGCAGTGAACTCTCTTGCGTATGAGGCCGAAGCCCGAGTCCGGGACCCGGTCTATGGCTGTGTCGGAGCCATCTCCTTCCTCCAAAGGCAAGTCCAGAGGCTCCAGAAGGAACTCGACGCTGCGAATGCCGACCTAATTCGGTACGCATGCAACGAGATACCTAATGCAGGAGTAAGTCATGTGGTTCAACCAAGCCCTGGTGCTCGCCCAAGAGCTTTGGATCAGTTTCATACAAGTTCATCAACTGGGTATTACAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCACTGCCTTGGAATGAAAACTCTCCTGGAAATGACATCAATGAAGGAGGAGGGGATGGCAATATTTGA | 552 | 48.37 | MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPNAGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGDGNI | 183 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 418205 | 420338 | + | Carg10325-RA | Car10g00093 | 154995 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car10g00093 | 183 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 182 | - | - | |
| Car10g00093 | 183 | PANTHER | ELONGATED PETIOLULE 1 | 1 | 182 | - | - | |
| Car10g00093 | 183 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 107 | IPR004883 | - | |
| Car10g00093 | 183 | Coils | Coil | 89 | 116 | - | - | |
| Car10g00093 | 183 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car10g00093 | Car13g00709 | CCT | |
| Car10g00093 | Car18g00177 | CCT | |
| Car10g00093 | Car13g00709 | ECH | |
| Car10g00093 | Car18g00177 | ECH | |
| Car10g00093 | Car11g00069 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g00432 | Car-Chr2:3418787 | Car10g00093 | Car-Chr10:418205 | 5.97E-53 | dispersed | |
| Car10g00093 | Car-Chr10:418205 | Car11g01357 | Car-Chr11:11112461 | 1.13E-69 | dispersed | |
| Car10g00093 | Car-Chr10:418205 | Car11g00069 | Car-Chr11:374319 | 9.95E-118 | wgd | |
| Car10g00093 | Car-Chr10:418205 | Car13g00709 | Car-Chr13:8335544 | 2.56E-66 | wgd | |
| Car10g00093 | Car-Chr10:418205 | Car14g00607 | Car-Chr14:3379792 | 1.08E-70 | wgd | |
| Car10g00093 | Car-Chr10:418205 | Car18g00177 | Car-Chr18:974033 | 7.27E-63 | wgd | |
| Car10g00093 | Car-Chr10:418205 | Car04g02589 | Car-Chr4:20334234 | 2.06E-64 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4128 | PF03195 | LOB | 5.00E-42 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car10g00093 | - | - | cmos:111430134 | 355.525 |