Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00093 ATGGCATCATCAAGTTCTTACAACTCTCCTTGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGTCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAGATCTTTGGGGCCAGCAATGTGACAAAGCTGCTGAATGAACTTCTGCCTCACCAAAGAGAGGATGCAGTGAACTCTCTTGCGTATGAGGCCGAAGCCCGAGTCCGGGACCCGGTCTATGGCTGTGTCGGAGCCATCTCCTTCCTCCAAAGGCAAGTCCAGAGGCTCCAGAAGGAACTCGACGCTGCGAATGCCGACCTAATTCGGTACGCATGCAACGAGATACCTAATGCAGGAGTAAGTCATGTGGTTCAACCAAGCCCTGGTGCTCGCCCAAGAGCTTTGGATCAGTTTCATACAAGTTCATCAACTGGGTATTACAATCAACATCTTCCTGCTTTTCCCATGGCTTATCCACTGCCTTGGAATGAAAACTCTCCTGGAAATGACATCAATGAAGGAGGAGGGGATGGCAATATTTGA 552 48.37 MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPNAGVSHVVQPSPGARPRALDQFHTSSSTGYYNQHLPAFPMAYPLPWNENSPGNDINEGGGDGNI 183
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 418205 420338 + Carg10325-RA Car10g00093 154995
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car10g00093 183 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 182 - -
Car10g00093 183 PANTHER ELONGATED PETIOLULE 1 1 182 - -
Car10g00093 183 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Car10g00093 183 Coils Coil 89 116 - -
Car10g00093 183 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00432 Car-Chr2:3418787 Car10g00093 Car-Chr10:418205 5.97E-53 dispersed
Car10g00093 Car-Chr10:418205 Car11g01357 Car-Chr11:11112461 1.13E-69 dispersed
Car10g00093 Car-Chr10:418205 Car11g00069 Car-Chr11:374319 9.95E-118 wgd
Car10g00093 Car-Chr10:418205 Car13g00709 Car-Chr13:8335544 2.56E-66 wgd
Car10g00093 Car-Chr10:418205 Car14g00607 Car-Chr14:3379792 1.08E-70 wgd
Car10g00093 Car-Chr10:418205 Car18g00177 Car-Chr18:974033 7.27E-63 wgd
Car10g00093 Car-Chr10:418205 Car04g02589 Car-Chr4:20334234 2.06E-64 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4128 PF03195 LOB 5.00E-42 No_clan Car TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00093 - - cmos:111430134 355.525