Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00102 ATGCCTGTAAATTCATGGACCCTCCCCTCCTCATCTATCCTAATCCTAATCCTCTGTTTTTCAGTCTTCTACCTCTTCCCTCTCCCAACTTCCGCCATTAACGAACAGGGTCAAGCTCTACTCACTTGGAAGCTCAGTTTCAATGGATCAAACCAGGCGGCTCTACGTAATTGGGACCCTAACAACCAAACTCCATGTGGGTGGTTTGGAATCACTTGCAACACAAACAGAGAAGTAGTGGAAGTAGTACTGAGGGACGTGGAATTACCTGGTGAACTTCCTTCGAATTTCTCTTCACTCTCGTCGTTGAACAGGCTCGTGTTGTCTGGTGTGAACCTCACCGGTTCCATTCCTAAAGAGATCGGTGTTCTTAGCCAGCTCCGGACCTTGGAACTTAGTGACAATGGCTTAACTGGAGAAATCCCAAGTGAAATATGTGCCTTGCTAGATCTCGAACAGCTTGACCTCAATTCGAATCATCTCGAAGGATCAATACCTGCAGGGATCGGGAATCTCACGAACTTGAAGGAGCTGATTCTGTATGACAATCAGTTAAGTGGTGAAATTCCCATTAGTATAGGAAATTTGAAGCAGCTTGAAGTGATTAGAGCTGGAGGGAACAAGAACTTACTTGGTTCTGTGCCGGAAGAAATTGGTAACTGCAGCAGTTTGGAGATTCTTGGTCTAGCTGAAACAAGCATCTCGGGGTTCCTTCCATCTAGTCTTGGCCGCCTCAAGAAGCTTCAAACATTGGCAATCTATACTACGCTACTCTCCGGCCAGATTCCTCATGAACTTGGCGACTGCACTGAGCTCCAAAACGTTTATCTCTATGAGAACTCGCTCTCCGGCTCGATCCCAAGCACGTTAGGAAGGTTACAAAATCTCCAGAGTTTGCTAGTATGGCAGAACAATTTGGTCGGCGTTATACCGATGGAGCTAAGTAAGTGTAACCAATTATTGGTTATCGACATTTCAATTAATTCCTTGACAGGAAGCATTCCTTCAACGTTTGGGAACTTGACATTGCTCCAAGAATTGCAACTGAGTTCAAATCAATTATCCGGTGAGATTCCGAAGGAGATCGGAAGCTGTTCGAGAATCACTCATATCGAGCTTGATAATAACCAGCTCACTGGTACGATCCCTTCTGAATTGGGAAATCTCACCAATCTGACATTGCTGTTCTTGTGGCAAAACAAGCTCGAGGGGAGTATTCCACCCACCATTTCCAATTGTGGCAACCTCGAGGCTTTGGATTTATCATTGAACGCCTTGACAGGTTCGATTCCGACTGGAATTTTCGAGTTGAAAAAGCTTTCCAAGCTTCTGCTCCTCTCCAACAACCTGTCTGGTGTGATACCGCCGGCGATTGGTAACTGTTCGTCTCTGTTTCGGTTACGAGCGAATGACAACAAGCTCACAGGAGAAATTCCGCCGGAGATTGGGAATTTGAAGAACTTGATTTTCCTAGACCTTGGAAACAATCGCCTCACTGGAGCGTTGCCTCCGGAGATCTCCGGCTGTAGAAATTTGACATTCCTCGATTTGCATTCCAACTCTCTAACAAAATCTCTTCCAGAAGAATTCAACCAGCTTTCTTCTCTTCAGTATGTTGATCTCTCAAATAATCAAATCGAAGGGACGCCGAACCCGAGTTTTGGAGCTTTCAACTCGCTCACGAAACTAATTCTCTCAAACAACCACTTCTCGGGGCCTGTACCGACTGAAATCGGTTCCTGCTTGAAACTTCAGTTACTGGATTTAAGTTGCAATCAGCTCTCTGGAAATGTTCCTCCGAGCTTAGGGAAGATTCCTTCACTAGAAATTGGTCTCAATCTGAGCTTAAACCATCTAACCGGCGAGATTCCCCCGGAGTTTGCAAATTTAGACAAGCTAGGGTCATTGGACCTCTCTTACAACCAACTCTCAGGCGACCTCCACATTCTCGCAGACCTGAAAAATCTCGTAGTCCTCAATGTATCACACAACAATTTCTCAGGGCGTGTGCCGGAGACGTCATTCTTCACGCAGCTCCCTCTAAGCGTCCTCTCGGGGAATCCGGACTTGTGCTTCGCCGGCGAAAAATGTTACGCCGATAACCACACCGGCGGCGGTCACCACACGCTAGCGGCTCGAGTGGCCATGGTGGTGTTACTGTGCACGGCGTGCGCACTGCTACTAGCGGCAGTATATATCATTCTCAAAGATAGACATTCGTGTCGAGGATGCTTCAATGGGTCCCGCGGTGAAGATTCAGACGCCGCCTTTGACAGCGACCTGGAGCTTGGCTCAGGCTGGGAAGTGACATTATACCAGAAGCTTGATCTTTCAATCTCCGACGTAATCAACTGCTTAACGCCGGCCAACGTCATCGGCCGCGGCAAGACCGGTGTGGTGTATAGAGTCTGCATCTCATCAGGTCTAATAATCGCCGTGAAGCGATTCCGATCATCAGAGAAGTTCTCGGCGGCAGCGTTTTCATCCGAAATCGCAACACTGGCGAGAATCCGTCATCGGAACATCGTCCGATTGCTAGGGTGGGGGGCGAATCGGAGGACGAAGTTGCTGTTCTACGACTACTTGCCGAACGGGAATTTGGGCGAGTTGCTACACGAGGGAAATGGGCGCGTGGGGTTGGACTGGGAGAGTAGATTCAAGATAGCATTGGGAGTGGCGGAGGGTTTGGCTTATTTGCACCACGACTGCGTGCCGGCAATACTGCACCGGGACGTGAAGGCTCACAACATTCTGTTGGGGGATCGCTACGAGGCGTGTTTGGCGGACTTTGGGCTCGCCCGCTTGGTTGAAGATGGTCCAAGCGGTTCGTCTTCCGCGAACCCCCAGTTCGCTGGTTCTTACGGCTACTTTGCACCCGGCCGACCCGACCCGCAAATCCAAGAGATCCTCCAAACATTAGGAATTTCCCTACTTTGCACTAGCGATCGTTCTGAAGAAAGACCGACAATGAAAGACGTAGCAGCTCTTTTACGGGAGATCCAACAAGATCACTTGGCAAACGTAGTAGAGGCCGTCGATAAGCCGCCACGAAACAATAGCAACGCAACAAGTTTGGAAACAACAACGTCATTTTCATCCTCCTCTTCTACAGCTCGTGGGAGTCATTTGCTTTTCACGTTGCCTCTTCAGGAGTCGTCACGTTGCTCATATGTGTCATTGTCCTCATCAAGCACGTATACGCCGCGTGAACAATAA 3216 48.6 MPVNSWTLPSSSILILILCFSVFYLFPLPTSAINEQGQALLTWKLSFNGSNQAALRNWDPNNQTPCGWFGITCNTNREVVEVVLRDVELPGELPSNFSSLSSLNRLVLSGVNLTGSIPKEIGVLSQLRTLELSDNGLTGEIPSEICALLDLEQLDLNSNHLEGSIPAGIGNLTNLKELILYDNQLSGEIPISIGNLKQLEVIRAGGNKNLLGSVPEEIGNCSSLEILGLAETSISGFLPSSLGRLKKLQTLAIYTTLLSGQIPHELGDCTELQNVYLYENSLSGSIPSTLGRLQNLQSLLVWQNNLVGVIPMELSKCNQLLVIDISINSLTGSIPSTFGNLTLLQELQLSSNQLSGEIPKEIGSCSRITHIELDNNQLTGTIPSELGNLTNLTLLFLWQNKLEGSIPPTISNCGNLEALDLSLNALTGSIPTGIFELKKLSKLLLLSNNLSGVIPPAIGNCSSLFRLRANDNKLTGEIPPEIGNLKNLIFLDLGNNRLTGALPPEISGCRNLTFLDLHSNSLTKSLPEEFNQLSSLQYVDLSNNQIEGTPNPSFGAFNSLTKLILSNNHFSGPVPTEIGSCLKLQLLDLSCNQLSGNVPPSLGKIPSLEIGLNLSLNHLTGEIPPEFANLDKLGSLDLSYNQLSGDLHILADLKNLVVLNVSHNNFSGRVPETSFFTQLPLSVLSGNPDLCFAGEKCYADNHTGGGHHTLAARVAMVVLLCTACALLLAAVYIILKDRHSCRGCFNGSRGEDSDAAFDSDLELGSGWEVTLYQKLDLSISDVINCLTPANVIGRGKTGVVYRVCISSGLIIAVKRFRSSEKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGELLHEGNGRVGLDWESRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEACLADFGLARLVEDGPSGSSSANPQFAGSYGYFAPGRPDPQIQEILQTLGISLLCTSDRSEERPTMKDVAALLREIQQDHLANVVEAVDKPPRNNSNATSLETTTSFSSSSSTARGSHLLFTLPLQESSRCSYVSLSSSSTYTPREQ 1071
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 465567 469375 + Carg10334-RA Car10g00102 155004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00102 1071 ProSitePatterns Protein kinases ATP-binding region signature. 792 814 IPR017441 GO:0005524
Car10g00102 1071 ProSiteProfiles Leucine-rich repeat profile. 632 654 IPR001611 GO:0005515
Car10g00102 1071 ProSiteProfiles Protein kinase domain profile. 786 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00102 1071 Pfam Protein kinase domain 790 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00102 1071 Pfam Leucine rich repeat 295 354 IPR001611 GO:0005515
Car10g00102 1071 Pfam Leucine rich repeat 510 570 IPR001611 GO:0005515
Car10g00102 1071 MobiDBLite consensus disorder prediction 1014 1037 - -
Car10g00102 1071 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Car10g00102 1071 ProSitePatterns Serine/Threonine protein kinases active-site signature. 907 919 IPR008271 GO:0004672|GO:0006468
Car10g00102 1071 MobiDBLite consensus disorder prediction 1013 1037 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00102 - - - cmos:111429763 1803.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00102 Car-Chr10:465567 Car17g00104 Car-Chr17:620658 0 dispersed
Car10g00102 Car-Chr10:465567 Car11g00076 Car-Chr11:405604 3.00E-36 wgd
Car10g00102 Car-Chr10:465567 Car18g00173 Car-Chr18:957895 1.23E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g792 . . . . . . . . . Cmo18g00141 Cma10g00113 Cma11g00083 Car10g00102 . . . . Bhi02g00489 . . . . . . Cla06g01679 . . . . . . Cone2ag0922 Cone16ag0085 . . Lsi02g00394 Csa01g00871 . Cme12g01675 . . . . . . . . . Cmo10g00117 Cmo11g00084 . Cma18g00183 . . . Cpe18g00852 Bhi08g01644 . . . . . . Cla01g01317 . . . . . . Lsi06g01569 Csa01g00130 Chy02g02597 Cme02g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002837 0 2 0 0 0 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 3 2 3 2 1 56
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89113 PF00069 Pkinase 8.90E-29 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00102 Car_Chr10 FPKM 1.083717 1.099131 1.092444 1.284903 1.765951 1.83711 1.948016 1.888799 2.105429 2.406256