Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00117 ATGCCGGGAATTGTCATGGATGAGATTAATGAAGAAAGGACTGTGAATAAACACCACAGTTCTTCAATTCATATGGAAGAGTCGTATGGAAACAAGTCGCCGAGGAGCGGGTTGAGTCTTCAGAGCCCTGGAAGTGTTCATGTCCATTTCCCTGTTGATGGCTTGGTTGATACCTCTATTGAGAAGCTCTATGAAAATGTTTGTGATATGCAAAGTTCGGATCGGTCACCTTCAAGGCGTAGCTTTGGTTCTGATGGTGAGGAATCCAGGATTGATTCTGAACTGAATCATCTTGTAGGGGGAGAGATGAGGGAGGTAGAGATAATAAAGGAGGAAGAGGAGATTGTTGAGAAGCCTGAACATAACTTGCCTAGTGAATCTATGAATCATTCACCATCTTCCGATAAGAAGGAGAAAACAGAAAATACACAACCTGGGAGCTCGAAACGTCTTTCTTCTGGAAGAAAAGCTACTCACCTGCATTTGGACCTGGAGACATCGTCGAAATCAAGTCCCAGGGGCAAGCGTTTGTCTGATAAGCCCCCTTTTAGCAGGAAGAATGAAAAGAATTTTAAAAGTCCAGTTGCTAGTCACTCAAAGAAACCGAAAGATTCACCTTTGAGAGGCTCAAAACTGCTGAATGGAACGGAGGATTTCAACGAATCAACGATGGATAATCCTGATCTAGGACCCTTTCTACTTAAGCAAGCAAGGAATTTAGTTTCTTCAGGGGAGAATCTGCAGAAAGCGCTTTTATTAGCTCTTCGTGCTGCAAAATCTTTTGAGCTATCTGCAAATGGGAAACCCAGCTTAGAACTTGCTATGTGTTTGCACGTGACAGCAGCAATATACTGCAGCTTAGGCCAATACAGTGAGGCAGTACCTCTATTGGAGCATTCGATTGAGATTCCTGCCATTGAGGAAGGCCACGAGCATGCATTGGCAAAATTTGCAGGCCACATGCAGTTGGGTGATACCTATGCAATGTTGGGCCAGCTGGAAAATTCTCTAGTCTGTTATACAACTGGTTTAGAGGTGCAGAAACGAGTGCTAGGAGAATCCGACCCCAGAGTTGGTGAGACGTATAGGTATTTAGCTGAAGCCCATGTTCAAGCCTTGCGATTTGATGAGGCTGAGAAATTTTGTCAAATGGCTCTTGATATTCACAAAAAGAATGTTGGTCCTGCTTCTCTTGAGGAGGCTGCAGATAGGAGGCTTATGGGTCTCATATGTGAAACGAAAGGAGACCATGAAGCTGCACTCGAGCATCTAGTCTTAGCCAGCATGGCCATGGTGGCCAATGGCCAGGAGACTGATGTGGCTGCAGTTGATTGCAGTATTGGAGATTCATACTTATCCTTGTCACGTTACGACGAGGCTGTTTTTGCTTATCAGAAAGCCCTCACTGTTTTCAAGACCACGAAGGGAGAAAACCATCCCGCAGTTGGTTCGGTATTTGTTCGTCTTGCTGATTTATACAACAAGACTGGAAAAATGAGGGAGTCAGAATCATACTGTGAAAACGCCCTTCGAATTTACGAAAAGCCTGTCCCTGGGATTCCTCCAGAGGAGATTGCCAGTGGTCTTACTGATATTGCTGCTATTTATGAATCAATGAATGAAGTTGAGCAAGCAATCAAATTATTACACAAGGCATTGAAAATATATAATGATGCCCCCGGACATCAAAACACCATTGCTGGAATTGAAGCCCAGATGGGTGTCTTGTATTATATGTTGGGGAAATATTCTGAATCTTACGACTCCTTCAATAATGCAATTCCTAAGCTCCGCAGCAGCGGAGAGAAAAAATCTGCTTTTTTTGGTATAGCCCTGAATCAAATGGGGCTTGTGTGTGTTCAGAAATACGCCATAAACGAAGCCGTGGAGTTATTTGAAGAAGCCAAGAGCATACTAGAAAAAGAATACGGACCGTATCATCCCGATACTCTCGGGGTATATAGCAACCTTGCTGGAACATACGATGCGATTGGCAGGTTGGATGATGCAATTGAAATCTTGGAGTATGTTGTTGGCATGCGGGAGGAAAAACTCGGGACAGCAAATCCCGATGTCGACGATGAGAAGAGGAGGTTGTCCGAGTTGCTAAAAGAAGCAGGTAGAGTTCGGAGCCGGAAGGCGAGATCGCTTGAGACTCTTCTCGATTCCAATACTCAACCTGGAAACAGTAAAGCTATAAAGGTTTGA 2208 44.2 MPGIVMDEINEERTVNKHHSSSIHMEESYGNKSPRSGLSLQSPGSVHVHFPVDGLVDTSIEKLYENVCDMQSSDRSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEEEIVEKPEHNLPSESMNHSPSSDKKEKTENTQPGSSKRLSSGRKATHLHLDLETSSKSSPRGKRLSDKPPFSRKNEKNFKSPVASHSKKPKDSPLRGSKLLNGTEDFNESTMDNPDLGPFLLKQARNLVSSGENLQKALLLALRAAKSFELSANGKPSLELAMCLHVTAAIYCSLGQYSEAVPLLEHSIEIPAIEEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKRVLGESDPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKGENHPAVGSVFVRLADLYNKTGKMRESESYCENALRIYEKPVPGIPPEEIASGLTDIAAIYESMNEVEQAIKLLHKALKIYNDAPGHQNTIAGIEAQMGVLYYMLGKYSESYDSFNNAIPKLRSSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEKEYGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARSLETLLDSNTQPGNSKAIKV 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 552566 556083 - Carg10349-RA Car10g00117 155019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00117 735 MobiDBLite consensus disorder prediction 10 25 - -
Car10g00117 735 MobiDBLite consensus disorder prediction 26 43 - -
Car10g00117 735 MobiDBLite consensus disorder prediction 718 735 - -
Car10g00117 735 MobiDBLite consensus disorder prediction 68 225 - -
Car10g00117 735 MobiDBLite consensus disorder prediction 1 43 - -
Car10g00117 735 MobiDBLite consensus disorder prediction 156 207 - -
Car10g00117 735 Coils Coil 692 712 - -
Car10g00117 735 ProSiteProfiles TPR repeat profile. 526 559 IPR019734 GO:0005515
Car10g00117 735 MobiDBLite consensus disorder prediction 80 124 - -
Car10g00117 735 MobiDBLite consensus disorder prediction 709 735 - -
Car10g00117 735 ProSiteProfiles TPR repeat profile. 441 474 IPR019734 GO:0005515
Car10g00117 735 Pfam Tetratricopeptide repeat 273 303 - -
Car10g00117 735 Pfam Tetratricopeptide repeat 610 677 - -
Car10g00117 735 Pfam Tetratricopeptide repeat 322 391 - -
Car10g00117 735 Pfam Tetratricopeptide repeat 440 515 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00117 - - - bhj:120070989 1293.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00117 Car11g00097 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00547 Car-Chr4:3081994 Car10g00117 Car-Chr10:552566 0 dispersed
Car10g00117 Car-Chr10:552566 Car16g00469 Car-Chr16:2973074 0 dispersed
Car17g01254 Car-Chr17:9497418 Car10g00117 Car-Chr10:552566 6.55E-52 transposed
Car10g00117 Car-Chr10:552566 Car11g00097 Car-Chr11:557067 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00117 Car_Chr10 FPKM 0.0 0.0 0.499631 0.0 1.430039 1.659275 1.910328 1.480688 1.398196 1.489663