Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00121 ATGGCTGCTCGAGGGGTCGATTTCAAGTGGTACGACGGTTTTTTCTTGTCGATGCTCGCGATTAGTGTGTATCCTTCAGTGTTTTGGGGAATTTTAGACTTGAGTGGATTTGCTCTTTATATTTCTTTGGTATTAGAGTTTGAAACGAGACATACTCATATCCTATGCTTTAAAATCAAGAGCAATGTCTTTCTCTTAACGTTTTTTATTTGTGTATTTTCTTTAACTATTTTGCTCGATAGAGTAGTTGTTTCGATCAACTGGAAGAGGTACCATCCTTGTGTACATCCCTTGCATATATGGATTTTGGTTGATTATACTACCGTCTTTGTTTTCCGTCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAATCCTTGCACTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATCGGTACTTTATGGTTCAGAGAAGCCCATAAATGTCTTTTTGAGCAAGGCCAGAAATGGGGATTCCTTATTTGGCTTCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCGTGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATACGGGGTCTTAGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCCGCAGGACAAGAAACAAGAGTAATGGGCCAAGATGCTGCTGCATATCATCCTGGACTTTATTTGACTCCTGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGTCCTATCTGCTTAGAAGAGTTCCATGTAGGGAACGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGACGAGTGGCTTCGACTAAATGTGAAATGCCCTAGATGTCGCTGCTCGGTCTTCCCAAACCTTGATCTTAGTGCTCTGTCCAATCTTCAGTCTGATACTGAAAGGCCATCTGCAAGTGTTGTTACGGCCAACCGTTATATGAGTCCTCAACCTTCCAGCCAAAGTTATCTGGTGAGATTGCAGGGTCTGCTTCGGCCTGTTCGCACAGAAAACACTGTTGCACACGGTGATTTAGAGTCTGCTAGTGCTTTGGAAGTTGCTGAGGATGCTGAGAATGGATCTTCCCATGACCAAACTATACCGGAAAGGTCTCCCATCTCAGTGCTTGACTATTCAGCCGCCTGGGAAGGGAGACTGGGCATGTGCTTCAAAGCAGATCTTGCAATTCCACTGGAGAATCTTCTAGGTTTACAGGTCAGGTCATATTTTATCTGA 1395 44.3 MAARGVDFKWYDGFFLSMLAISVYPSVFWGILDLSGFALYISLVLEFETRHTHILCFKIKSNVFLLTFFICVFSLTILLDRVVVSINWKRYHPCVHPLHIWILVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSILALLLYPFLWAWTAIGTLWFREAHKCLFEQGQKWGFLIWLLFSYCALVCIACVSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLQSDTERPSASVVTANRYMSPQPSSQSYLVRLQGLLRPVRTENTVAHGDLESASALEVAEDAENGSSHDQTIPERSPISVLDYSAAWEGRLGMCFKADLAIPLENLLGLQVRSYFI 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 569970 574855 - Carg10353-RA Car10g00121 155023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00121 464 Pfam Ring finger domain 292 334 IPR001841 -
Car10g00121 464 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00121 Car13g00734 CCT
Car10g00121 Car18g00155 CCT
Car10g00121 Car11g00100 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00121 Car-Chr10:569970 Car02g00960 Car-Chr2:6762800 1.10E-12 dispersed
Car10g00121 Car-Chr10:569970 Car11g00100 Car-Chr11:574218 0 wgd
Car10g00121 Car-Chr10:569970 Car13g00734 Car-Chr13:8446837 6.27E-131 wgd
Car10g00121 Car-Chr10:569970 Car18g00155 Car-Chr18:834119 6.02E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00121 K16284 - csv:101208939 671.003