Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00132 ATGCATGGGCGTCGAGGTGAGGACTGGAAACGGACTCGGCACATGTGGACAGTCCCCACACGTGGTACCCAGATCGTAGAAGCAGATGGTTCTTCATCATCGTCTTCGTCTGCACTTAATTCGTTTTGCAAGGGTGGACGTAGGATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCTCAAGATTCCCCACCTTTTATTGGCATAATCCGGTGGTTAACGGCTGGTAAGGAGAATAAGTTAAAGTTAGGTGTGAATTGGCTTTATCGATCTTCTGAACTAAAGCTCGGCAAAGGCATCCTTTTGGAAGCTGCGCCGAACGAAGTCTTCTATTCCTTTCATAAGGATGAAATTCCTGCTGCATCTTTACTCCATCCGTGTAAAGTTGCATTTCTCCCAAAGGACGTTAAACTTTCATCAGGGATCTCGTCATTTGTGTGCCGGAGAGTGTATGATATAACAAATAAGTGTTTATGGTGGCTTACCGATCAGGATTATATTAATGAACGTCAGGAAGAAGTAGATCAATTGCTATATAAGACAAGATTAGAAATGCATGCTTCAGTGCAATCCGGTGGCCGATCACCTAAGCCTACAAGTGGTCCAACATCAACATCTCAGTTAAAAGCTAATTCAGATAGTGTTCAAACCACTGCCTTTCCTTCTCACACAAAAGGCAAGAAAAGAGAAAGAAGTGACCAGGGATTAGAATCTGTTAAACGTGAGCGCATCATCAAAGCTGACGAAGGGGATTCTGCTAACTGCAGATTGGAAAATACGTTAAAGTCTGAGATTGCAAAAATTGCTGAAAAAGGAGGCTTAGTTGATTCTGAAGCTGTCGAGAAATTGGTGCAGCTTTTGCTGACTGATAGAAATGACAAAAAAATTGATTGGGCTTGCAGATCAGCACTTGCAGGTGTGATAGCTGCCACAGATAAGGTCGAGTGCCTTAGTCAATTTGTGCATCTTAAGGGTTTACTTGTACTTGATGAATGGCTCCAAGAGGTTCACAGGGGGAAAATTGGCAGTGGTGGTAGCCCCAAGGATAGTGATAAAGCAGTTGAGGAATTTCTCCTGGTTTTGCTTCGAGCCCTTGATAAACTACCTGTAAATCTTCCTGCTTTACAGATGTGCAATATTGGGAAGTCTGTGAATCATTTACGCTCACATAAGAATTTAGAAATTCAGAAGAAAGCAAGGAGCTTAGTGGACACATGGAAAAAACGCGTTGAAGCGGAAATGAACATTAATGATGCAAAGTCTGGTTCAAACCAAGCTGTTGCATGGAGTGCAAGGACTCGTCCATCTGAAGTTTCTCATGGAGGGAGGAATCAAGATGCATCCTCTGAAGTTGCCATGAAGAGCTCGGTTTCTCAGCTCACTACATCCAAATCTGTTTCAGTTAAGCTAGCTCAGGATGAGAGTGTTACAAGATCTGCATCTGCCTCTCCTGGTTCGATGAAACCTGTTTTATCACCTGCATCAGCAAGCATTAACTCGAAAGATGGATCTTCCAGAAATCCTGGTGTTTGTGGCACTACTGATCTTGCTCAAACTATTGCCAAGGATGAAAAGAGTAGCAGTTCCAGCCAGTCCCACAATAATAGTCAATCTTGTTCTAGTGAACACGGTAAAAGTGGTGGCTTAGGGAAGGAGGATGCAAGAAGCTCTACTGCTGGTTCTATGAGCGTGAACAAGATCTCAGGTGGTGGATCTCGCCAGCGCAAGTCAGTTAATGGATTTCCTGGTTCTGTTCTCTCGGGGGCTCAACGAGATGTAGGATCGGGGAAAAGTTCTTTGCATAGAAACACAGTCTTAGAGAGATCATCACAATCTGGAATGACCTTTGAAAAGGCATGTGATGGACCTATTGTTGAGGGAAACAGTCCTAAATTGATAGTGAAGATCACCAATCGTGGCCGGAGTCCTGCACAGAGTGCTAGTGGAGGATCTTCTGAAGATCCTTCGATAATGAATACCAGGGCTTCTTCTCCTCCACTTTCAGAGAAGCTTGATCAATTTGATCACAGTAAGAGTGATACATGTCAACCTAATATTACTGGAGATGTGAATGCTGAGCCCTGGCAGAATAGTGATGTAAAGGATATGGTGACTGGGCCTGATGATGGTGATGGATCTCCTGCTGCTGTAAATGGTGAAGAGCGATGTAGGACTGCTGAGGATGTTAAAGTTTCAAAGACAAATTCGTCATCGTTAGCAAATGATCAAAAGAATGGGAAGTTACATGAGGCTTCTTTTAGCTCTATGAATGCTTTAATTGAGAGTTGCATTAAATGCTCCGAAGCGAGTATGCCTACCTCTCTCACAGATAATGTTGGAATGAATTTACTCGCTAGTGTGGCAGCTGTTGAGATGTCAAAGTCTGATTTTGTTTTGCCTTCCGATACTCAAGGAAATATCACTACAGTTGACCGAAGAGGCAGTGATTGTAAAGTCAAAGCATCTTGTCCTGAAGAGGATGCTAGAGATAACATGCAGTCAAATGATGCTATGGTTGTTAATGAGCAGGGTGTGATCATTGGTTCCTTTGGAGCTAATGGGGATGGAAGTTCTGCTTCACATTCTGAAGAGAAACCTATTGGAGATCTAAATGGTCATTCAAAATCTTCTGGTGTAAATTTGCAACAAACGGCTGTGCCACTGGCAGACGGATGTATAAAAATGGACGAGGCTGGAGGCCCTGCCTCTCCTGCTAGGATACCAGAGAAGGGCTCTGAGATTGATGGGGCTAATCCAGTCAAGGACAGAAAGACATCTGATGTAGTAGATGAGGATAGCAGTCCAGAATCAAGACCAAAGCCAAGCAGTTCTTTTCCTGATGGTGGCATGGTCGTTGATGGTATCTCGAATCGGGAAGTTGAAATGAATGTTGTTGACAAGCCTTTGCATCGGTTCCAAGAAGCTGATGACAATACAGATAATAGAATGAATGGTGTTAGTACAGCAGACCAAAGGCCATCATCAAAGTCGAACAGTGATTCTGCTAAATTAAAGAATGATGAATTATTTCAGGCTTCAGGCTCTTCAAGTGATCTGGTTTCTATAAATGCAAGTGGGATGAAGGGCGAGAAGGATGATGAAACCAACGAATCAGCTGATGTCAAACAACTTGAAAAACATCAAAGTGATCGAGACTCTATGCCTTCTGAGTCCCGAGATTTAGGTGGTTTGTGTTCAGCTATCAACCATGAGGATGAGCATGCAGAGGAGAATTTGGAATGTAACGAGGATAATGAGAAAAGTGGAGTACAAACACATCAGGGGCAATCTATTATGTCTCCTGTTCAAGAAACTGAACAGCATCTGCCATCCAAGAGATCCAAATTAGCTGGTGTAGAAGCAGAAGAGGCAGAGGAGTCTACATCTACTGCTGCAGATCCTGGTTCCATGACTGCTGCGGGGGTATCAGATGTGGATGCTAAGTTGGAATTTGATTTGAATGAAGGCTTTAATGTAGATGATGGAAAATGCAGTGAGCCAAGTAGCTTTACAACGTCTGGTTGTTTGACAACTGTTCAGTTAATTAGTCCGTTGCCCCTTCCTGTATCTAATGTGGTAAGCAACATTCCTGCTTCAATTACAGTTGCAGCTGCAGCAAAAAGACCTTTCGTTCCACCTGATGATCTATTGAGGAGCAAAGGGGAACTGGGTTGGAAAGGATCAGCTGCCACAAGTGCTTTTCGACCTGCTGAACCTAGAAAAGTTCTAGAAATGCCACTAGGTGTTGCAACCACTCCACTTGCTGATGCTGTGGCTAATAAAATTTCTCGACCTCCGTTGGATATTGATTTGAATGTGCCTGATGAAAGGATTCTTGAGGATATGAATGTCCAGATGTCTACTCAGGATGTGGCCTCTAAGTCTGACCTGACTAATAATCGTGATCTGACACATGGTATTGGTGTCTCACATGCACGTTGTTCTGGAGGACTAGATCTTGACTTGAACCGAATTGATGACGCTCCCGATCCAAGCAACTTCTCCTTGAACAACTGTCGTAGAATAGATGCTCCTCTTAATGTTAAATCATCGACTGTTCCTCTCAATGACAAGGTGAATTTTCGTAGGGACTTTGATTTAAATGGACCTATTGTTGATGAGACCCCTACTGAACCATCAATATTTCCTCAGCATGCTAGAGGCAGTATGCCATCCCAGCCTTCTGTTTCAGGTCTTTGGATGAACAGTGCAGAAATGGGAAATTTTCCATCATGGTTTCCTCCAGGGAATGCTTATTCAGCTGTTGCAATTCCATCGATTTTGCCTGATAGAGCAGAACAGCCTTTTCCAGTTGTTGCAACAAATGGACCACCCAGGATTTTGGGACCCACAAGTGGTAGCAGTCCATATAACCCTGATGTCTTTAGAGGGCCAGTATTATCATCTTCTCCGGCTGTGCCATTTCCTTCTGCAGCTTTTCAGTATCCTGTCCTCTCTTTTGGAAACGGCTTTCCTCTACCGTCAGCCACGTTTTCAGGTAATGCAACAGCATATGGCGATTCATCATCTGGTAGCAGGCTTTGCTTCCCTGCAGTCCCCTCACAGTTCCTAGGTCCTCCTGGTACAGTATCAACCCCTTATCCAAGACCTTATGTTGTCAGTCACTCAGATGGCGGCCACAATACTAGTTCTGATAGTAGTAGAAAGTGGGGAAGACAAGGTTTAGATCTAAATGCTGGACCTGTAGTTGCAGACATGGAAGGAAGAGAGGAATCATCATCCTTTGTACCCAGGCAACCATCTGTTGCCAGTTCGCAGGCCACTACCGAGGAGCATATGCGGGTTTACCAGCCAACAATTGGCATAATGAAGAGAAAGGAACCAGAGGGAGGATGGGATGGTTACAAACAGTCGTCATGGTATGCTGTGAGGATTGGCATTGAGCTGACTTCCCCTGGCTGTCATCTAACTTTGTGTGCTTTTCGGAGGAGGTGGTGA 4959 44.04 MHGRRGEDWKRTRHMWTVPTRGTQIVEADGSSSSSSSALNSFCKGGRRISVGDCALFKPPQDSPPFIGIIRWLTAGKENKLKLGVNWLYRSSELKLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDVKLSSGISSFVCRRVYDITNKCLWWLTDQDYINERQEEVDQLLYKTRLEMHASVQSGGRSPKPTSGPTSTSQLKANSDSVQTTAFPSHTKGKKRERSDQGLESVKRERIIKADEGDSANCRLENTLKSEIAKIAEKGGLVDSEAVEKLVQLLLTDRNDKKIDWACRSALAGVIAATDKVECLSQFVHLKGLLVLDEWLQEVHRGKIGSGGSPKDSDKAVEEFLLVLLRALDKLPVNLPALQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSNQAVAWSARTRPSEVSHGGRNQDASSEVAMKSSVSQLTTSKSVSVKLAQDESVTRSASASPGSMKPVLSPASASINSKDGSSRNPGVCGTTDLAQTIAKDEKSSSSSQSHNNSQSCSSEHGKSGGLGKEDARSSTAGSMSVNKISGGGSRQRKSVNGFPGSVLSGAQRDVGSGKSSLHRNTVLERSSQSGMTFEKACDGPIVEGNSPKLIVKITNRGRSPAQSASGGSSEDPSIMNTRASSPPLSEKLDQFDHSKSDTCQPNITGDVNAEPWQNSDVKDMVTGPDDGDGSPAAVNGEERCRTAEDVKVSKTNSSSLANDQKNGKLHEASFSSMNALIESCIKCSEASMPTSLTDNVGMNLLASVAAVEMSKSDFVLPSDTQGNITTVDRRGSDCKVKASCPEEDARDNMQSNDAMVVNEQGVIIGSFGANGDGSSASHSEEKPIGDLNGHSKSSGVNLQQTAVPLADGCIKMDEAGGPASPARIPEKGSEIDGANPVKDRKTSDVVDEDSSPESRPKPSSSFPDGGMVVDGISNREVEMNVVDKPLHRFQEADDNTDNRMNGVSTADQRPSSKSNSDSAKLKNDELFQASGSSSDLVSINASGMKGEKDDETNESADVKQLEKHQSDRDSMPSESRDLGGLCSAINHEDEHAEENLECNEDNEKSGVQTHQGQSIMSPVQETEQHLPSKRSKLAGVEAEEAEESTSTAADPGSMTAAGVSDVDAKLEFDLNEGFNVDDGKCSEPSSFTTSGCLTTVQLISPLPLPVSNVVSNIPASITVAAAAKRPFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKVLEMPLGVATTPLADAVANKISRPPLDIDLNVPDERILEDMNVQMSTQDVASKSDLTNNRDLTHGIGVSHARCSGGLDLDLNRIDDAPDPSNFSLNNCRRIDAPLNVKSSTVPLNDKVNFRRDFDLNGPIVDETPTEPSIFPQHARGSMPSQPSVSGLWMNSAEMGNFPSWFPPGNAYSAVAIPSILPDRAEQPFPVVATNGPPRILGPTSGSSPYNPDVFRGPVLSSSPAVPFPSAAFQYPVLSFGNGFPLPSATFSGNATAYGDSSSGSRLCFPAVPSQFLGPPGTVSTPYPRPYVVSHSDGGHNTSSDSSRKWGRQGLDLNAGPVVADMEGREESSSFVPRQPSVASSQATTEEHMRVYQPTIGIMKRKEPEGGWDGYKQSSWYAVRIGIELTSPGCHLTLCAFRRRW 1652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 619282 626277 - Carg10364-RA Car10g00132 155034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00132 1652 MobiDBLite consensus disorder prediction 1581 1595 - -
Car10g00132 1652 ProSiteProfiles TFIIS N-terminal domain profile. 327 413 IPR017923 -
Car10g00132 1652 MobiDBLite consensus disorder prediction 639 667 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 979 1023 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 1576 1595 - -
Car10g00132 1652 ProSiteProfiles BAH domain profile. 47 162 IPR001025 GO:0003682
Car10g00132 1652 MobiDBLite consensus disorder prediction 1066 1087 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 556 584 - -
Car10g00132 1652 Pfam TFIIS helical bundle-like domain 361 410 IPR017923 -
Car10g00132 1652 MobiDBLite consensus disorder prediction 1370 1389 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 893 953 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 1027 1057 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 1108 1122 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 416 627 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 915 937 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 187 241 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 192 222 - -
Car10g00132 1652 Pfam BAH domain 49 156 IPR001025 GO:0003682
Car10g00132 1652 MobiDBLite consensus disorder prediction 417 544 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 639 743 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 591 616 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 850 878 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 1088 1107 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 969 1139 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 223 241 - -
Car10g00132 1652 MobiDBLite consensus disorder prediction 678 694 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00132 - - - bhj:120071278 2852.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01219 Car-Chr2:8273921 Car10g00132 Car-Chr10:619282 2.10E-24 dispersed
Car10g00132 Car-Chr10:619282 Car16g00597 Car-Chr16:3800537 0 dispersed
Car10g00132 Car-Chr10:619282 Car11g00107 Car-Chr11:609816 0 wgd
Car10g00132 Car-Chr10:619282 Car14g00576 Car-Chr14:3130662 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g704 . . . . Bpe12g00585 . . Bma12g01028 . . . . Car10g00132 . Sed08g1505 . Cpe04g01543 Bhi02g00413 Tan09g2404 Cmetu02g1332 . Hepe09g0183 . . Cla06g01645 Cam06g1830 Cec06g1879 Cco06g1885 Clacu06g1789 Cmu06g1731 Cre06g2549 . . Cone13ag0127 Cone19ag0131 . . . . Blo13g00047 Blo15g00276 . . Bpe07g00824 . . Bma08g00176 . Cmo10g00147 Cmo11g00110 . . . . . Cpe18g00833 . . . . . . . . . . . . . . Lsi06g01533 Csa01g00170 Chy02g02561 Cme02g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4131 PF01426 BAH 1.90E-08 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00132 Car_Chr10 FPKM 0.360587 0.440462 0.309257 0.334738 0.146432 0.11086 0.0 0.714744 0.564125 0.807595