Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00136 AGATCTTCTGCCTCTTCTTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCTTCTCAGCTTGGCAGTTCAGTTTAGTTTTGTTCTGTTTCTGTTCATATTCTTCCTTGAATCCTAAAGATTTTTTGAAGATGGCGTTTTTAGGGACAACCCAAAAGTGCAAGGCCTGTGACAAAACTGTTTACTTGGTTGATCAGCTCACTGCTGATAACAAAATCTACCACAAGGCCTGTTTCAGGTGCTACCATTGCAAGAGCACTCTAAAGTTGTTCAATTACTCCTCCTTTGAAGGTGTATTATATTGTAAACCCCACTTTGATCAGTTGTTCAAGATGACTGGAAGCTTGGAAAAAAGTTTTGAAGGTACTCCAAGAACCATTAGAACAGACAGATCTACCAATCAGGTCCAATCCAACAGCAAAGTGTCGAGTTTATTTGCTGGAACTCAAGATAAATGTGTTACTTGCAAGAAAACTGTTTATCCAATTGAGAAGGTGGCAGTAGATAGTAAATCATACCACAGAGCTTGCTTCAGGTGCTCACATGGAGGATGTGTGATTAGCCCATCAAACTACATAGCACACGAACATCGACTGTACTGTAGGCATCATCACAACCAACTCTTCAAACAGAAGGGGAATTTCAGCCAACTTGACAAGCATGAAGAGATTAAAGGGAGTGACTGA 681 41.12 RSSASSSSLPFPSLPFFSAWQFSLVLFCFCSYSSLNPKDFLKMAFLGTTQKCKACDKTVYLVDQLTADNKIYHKACFRCYHCKSTLKLFNYSSFEGVLYCKPHFDQLFKMTGSLEKSFEGTPRTIRTDRSTNQVQSNSKVSSLFAGTQDKCVTCKKTVYPIEKVAVDSKSYHRACFRCSHGGCVISPSNYIAHEHRLYCRHHHNQLFKQKGNFSQLDKHEEIKGSD 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 644745 646689 - Carg10368-RA Car10g00136 155038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00136 226 Pfam LIM domain 52 106 IPR001781 -
Car10g00136 226 Pfam LIM domain 151 206 IPR001781 -
Car10g00136 226 ProSiteProfiles LIM domain profile. 149 209 IPR001781 -
Car10g00136 226 ProSiteProfiles LIM domain profile. 50 110 IPR001781 -
Car10g00136 226 ProSitePatterns LIM zinc-binding domain signature. 52 86 IPR001781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00136 K09377 CSRP; cysteine and glycine-rich protein - csv:101212133 389.037
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00136 Car11g00110 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01390 Car-Chr1:12146568 Car10g00136 Car-Chr10:644745 4.17E-18 dispersed
Car05g00115 Car-Chr5:600162 Car10g00136 Car-Chr10:644745 3.41E-93 dispersed
Car09g00248 Car-Chr9:1360825 Car10g00136 Car-Chr10:644745 2.15E-16 dispersed
Car10g00136 Car-Chr10:644745 Car19g00404 Car-Chr19:5929983 2.94E-93 dispersed
Car10g00136 Car-Chr10:644745 Car11g00110 Car-Chr11:636696 1.17E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g698 Blo04g00744 . . . Bpe12g00582 . . . . . Cma10g00145 . Car10g00136 Car11g00110 Sed08g0155 . Cpe04g01541 Bhi02g00404 Tan09g2210 Cmetu02g0989 . Hepe09g0177 . . Cla06g01642 Cam06g1826 Cec06g1874 Cco06g1881 Clacu06g1785 Cmu06g1726 Cre06g2545 . . . Cone19ag0128 . . . . Blo13g00045 . . Bda14g00823 . . Bma03g00797 Bma08g00180 . Cmo10g00152 . . . . . . Cpe18g00829 . . . . . . . . . . . . . . Lsi06g01528 Csa01g00174 Chy02g02557 Cme02g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000380 2 4 3 3 2 4 8 4 4 3 3 4 8 4 4 7 4 3 8 4 4 4 4 4 4 3 4 8 4 3 128
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4132 PF00412 LIM 4.70E-10 CL0167 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00136 Car_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.629352