Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00143 ATGGCGAATCTTCTTCTATCGGATTCTTCTTCGAAAGCTTATAGCCGGAAGCAGAAATCCCTCGGTCTGCTCTGCTCCAATTTTTTGAGGTTGTATGATCGAGGTGATGTTCACTCAATCAGCCTCGACAATGCCGCCTCTCGGCTAGGTGTTGAAAGGCGACGGATCTACGACATTGTCAACGTTTTAGAAAGTGTTGGAATTCTTTGTAGAAAAGCCAAGAATCAATATAGTTGGATAGGATTTTCTGGCATTCCCAAGGCACTACGGCAACTTAAGGAAGAAGATATGAAGGGAAATAACTCTGCCATAGCTTCCTATGATCACTCAAGATTGATAGATGAAGATGAAACATGTTCAGATCTCACTTCTGTGAGCCACGAGTCAATCCCTATGATGTCTAAATCTTCAGCCTCAGTGAGATGTGTGGCGTCAGAAAACCGGAGGGAAAAATCTCTTGCACTTCTTACGCAGAATTTTGTCAAGCTCTTTGTCTGTTCTAACGCACATCTGATTTCACTCGATGAAGCTGCAAAGTTACTGCTAGGCGATGCACAAAGTGAATCCGTAATGAGAAGCAAAATCAGACGCCTTTACGATATTGCAAATGTGTTAGCTGCAATTCATCTTATTGAAAAGACGCATACCGTTGATACCAGAAAGCCTGCATTCAGGTGGTTAGGATTTAGAGGTAAAGTTGAGAATTGTCGTGCAGGCAAGCCAATTCCATGTGGTTCAAATAAAAGGACTTTTGGAACCGATATAACTAATATCAACTTGAAGAGAAACAAAGTGGTCAATTCATTTGATCTGAATAAGAGCCCCAATTCCCAGAAACATATGCATGTGCATCTTGAGGGTTGTAGAGTTGAAGTAGATGTGAACCAAAGTGGCAAATTTGAGCGCCATCCAAATTCCAAGAGCTTCATATTTGGACCCTTTTCTCCCGTTGCTAGATTGGAAGTTAGAGCTTCTAAAAATGAAGTGAAACGGGTTCGTCATAACTGGGTGAGCCTTGCCTCAACTTATCATCCTCAGTATCAGAACCAAGCTTTAAGAGAATTATTCTCTCATTACAAGGATGCCTGGAAGTTATGGTACTCTGAAACTGTGAACAGATCAATACAAATTCCTGAGGCATAA 1143 41.47 MANLLLSDSSSKAYSRKQKSLGLLCSNFLRLYDRGDVHSISLDNAASRLGVERRRIYDIVNVLESVGILCRKAKNQYSWIGFSGIPKALRQLKEEDMKGNNSAIASYDHSRLIDEDETCSDLTSVSHESIPMMSKSSASVRCVASENRREKSLALLTQNFVKLFVCSNAHLISLDEAAKLLLGDAQSESVMRSKIRRLYDIANVLAAIHLIEKTHTVDTRKPAFRWLGFRGKVENCRAGKPIPCGSNKRTFGTDITNINLKRNKVVNSFDLNKSPNSQKHMHVHLEGCRVEVDVNQSGKFERHPNSKSFIFGPFSPVARLEVRASKNEVKRVRHNWVSLASTYHPQYQNQALRELFSHYKDAWKLWYSETVNRSIQIPEA 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 685152 688457 - Carg10375-RA Car10g00143 155045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00143 380 Pfam E2F/DP family winged-helix DNA-binding domain 150 228 IPR003316 GO:0005667|GO:0006355
Car10g00143 380 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00143 Car13g00748 CCT
Car10g00143 Car18g00138 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00143 Car-Chr10:685152 Car07g00815 Car-Chr7:4316011 3.03E-10 dispersed
Car10g00143 Car-Chr10:685152 Car13g00747 Car-Chr13:8510450 7.16E-125 wgd
Car10g00143 Car-Chr10:685152 Car18g00138 Car-Chr18:741325 1.25E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4133 PF02319 E2F_TDP 7.80E-20 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00143 K09391 - csv:101210753 542.347