Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00145 ATGGCGGCGGTTCCCGGCGAACTTGTTGGGGTTTCTGATGATGATTTGAAACAGAGTGGTTTGGCCCAGATTCATGTTCTTGCTGTTGATGATAGCCTCGTTGATCGGAAGGTTATTGAGCGGTTGCTGAAGATCTCGTCTTGTAAAGTGACTGCTGTTGAGAGTGGGAGAAGTGCTCTTCAATATCTGGGTTTGGATGGGGAAGCCAATTCTGTCCGGTTTAGTGATTTGAAGGTGAATCTCATCATTACAGATTATTCCATGCCTGAAATGAATGGATATGAACTGCTGAAGAAGATCAAGGAATCATCGGCTCTCCGGGAGATTCCTGTTGTGATAATGTCATCGGAGAATGTTTTGGGTCGAATAGAGAATTGCTTGAAGGAAGGGGCTGAGGAGTTCATAGTGAAGCCTGTGAAACTGTCTGATGTGAAACGATTGAAGGACTACTTCATTATGGAAGGAGAAAATGGAGGAAAGAAGATTAGTCATAAGAGGAAGCTTCGTGTTGATGATCATGATCATGATCATCACTTCTTGACTCCTGGGTCTCCGCCGCTGCCGCCGCCGATGGTGGGTTTCGACCATTGCCAAGGGTATCTGCAACGAATCACATGTTCGTCAAAGAAACCAAGGTTCCTCAATGGCGACCAGTTCACGTAA 663 45.85 MAAVPGELVGVSDDDLKQSGLAQIHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDGEANSVRFSDLKVNLIITDYSMPEMNGYELLKKIKESSALREIPVVIMSSENVLGRIENCLKEGAEEFIVKPVKLSDVKRLKDYFIMEGENGGKKISHKRKLRVDDHDHDHHFLTPGSPPLPPPMVGFDHCQGYLQRITCSSKKPRFLNGDQFT 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 689625 690563 + Carg10377-RA Car10g00145 155047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00145 220 ProSiteProfiles Response regulatory domain profile. 25 152 IPR001789 GO:0000160
Car10g00145 220 Pfam Response regulator receiver domain 26 144 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00284 Car-Chr4:1597898 Car10g00145 Car-Chr10:689625 3.27E-17 dispersed
Car10g00145 Car-Chr10:689625 Car14g00475 Car-Chr14:2529750 1.62E-48 dispersed
Car10g00145 Car-Chr10:689625 Car04g01645 Car-Chr4:9472102 8.35E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4134 PF00072 Response_reg 1.30E-21 CL0304 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00145 K14492 - csv:101214143 283.878