Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00154 ATGGATCTTCCACTTGTTAACGAATCATCCTTCTCCGCTGCGAATCCTTCTGCTTACAGCCTAGCCGCGATTTGGCCTTTCGGCGGGGAGCAGGGCGGGAACGCATTGGGTCTCCGAATGGCTAGTTTGAGTCAGAATCTTGGTGGGTTTCCCGAGAGCTCCACGAATCGCGACGGATCAATGGAGGAATCGACTGTGACGGAGCAGAGTGGCGGTGGGAGAAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCGAGAATGGTTTCCACTAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTGGTGGCATCCAGAGACGAAGGTGGTGGTATAAAAGCTGAAGTAGAACCTAGCTCAGCAGATGGTAAGAAGCTGGCCGAGCAAAGCCGGAAACCCGAACCACCAAAAGATTACATCCATGTCAGGGCGAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCGAGAAGAGAAAAGATCAGTGAGAGAATGAAAATTTTGCAGGACTTGGTTCCGGGTTGTAACAAGGTTATTGGAAAAGCACTTGTTCTTGATGAGATAATAAATTATGTCCAATCACTGCAACGTCAAGTCGAGTTACTCTCCATGAAGCTTGAAGCTGTGAATGCCAGAATGAACTTATGCCCAGCCATAGAAGGTTTTACCGCAAAAAATATGGTTAATCAACCATATGATGCAGTTGGAATATTATATGGTTCACAAGCGGCAAGAGATTATACCCAAGCTGCGCAACCAGAATGGTTGCATATGCAGATCGGTGGAAGCTTTGAAAGAACATCTTAG 831 46.57 MDLPLVNESSFSAANPSAYSLAAIWPFGGEQGGNALGLRMASLSQNLGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRMKVVASRDEGGGIKAEVEPSSADGKKLAEQSRKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYVQSLQRQVELLSMKLEAVNARMNLCPAIEGFTAKNMVNQPYDAVGILYGSQAARDYTQAAQPEWLHMQIGGSFERTS 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 742369 744948 - Carg10386-RA Car10g00154 155056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00154 276 Coils Coil 200 220 - -
Car10g00154 276 MobiDBLite consensus disorder prediction 85 105 - -
Car10g00154 276 MobiDBLite consensus disorder prediction 106 143 - -
Car10g00154 276 MobiDBLite consensus disorder prediction 47 68 - -
Car10g00154 276 MobiDBLite consensus disorder prediction 47 143 - -
Car10g00154 276 MobiDBLite consensus disorder prediction 69 84 - -
Car10g00154 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983
Car10g00154 276 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00154 Car11g00126 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00154 Car-Chr10:742369 Car12g00674 Car-Chr12:4633152 3.87E-88 dispersed
Car13g00671 Car-Chr13:8172861 Car10g00154 Car-Chr10:742369 2.60E-10 dispersed
Car10g00154 Car-Chr10:742369 Car11g00126 Car-Chr11:713031 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4136 PF00010 HLH 2.40E-07 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00154 - - csv:101215588 490.73