Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00161 ATGGACGGCGCCACCGCCGCCTCTCTTGATCGCTCCTCTCACGCAAATCAATATCATGAAACGCCGGAAACGCCGGAAGCGCCGGAAGATTTCTACTCCGATTCCGGACTCTCACATCTTCCGCTGGCCGAGGCTCCGGTTCTAGTGCTTATTAAATTCCACACAGCGCTGCGATCCGAGCTTGCGGATTTACGGCGCGTGACGTTGGCCGCGGCGGAGAGTGGGTGTTATGGCCGCAAGTTCGTGTCGGAATTGATTCGGAGAGTTGAGTTTCTGAAACTTGCTTATAAGTACCATTGCGCCGCCGAGGATGAGGTTGTATTCCCAGCTCTTGATGTACACACAAAAAATGTAATCTCCACGTATTCTCTGGAGCATGAAAGCTTAGATGGCCTCTTCACCTCCATTTCTGAACACTGTGAAGAAATCAATGCAGAAAACAAAGATATCTCCAAGCCATTTCAGGAACTGGTTTTCTGTTTGGGCACGATTCAAACCACCATTTGCCAGCATATGATCAAAGAAGAACAACAGGTTTTTCCATTGCTGATCAAACAGTTCTCTGCAAGAGAACAGGCGTCACTTGTGTGGCAATTCATTTGCAGTGTGCCGATGATACTATTGGAGGAGCTTCTGCCATGGATGATGTCTTTTCTTCCATCGGCGCAACAATCGGAAGTCGTAATCTGCCTACGAGATGTAGTACCGAACGAGAAACTTCTGCAAGAGGTGATAATGTCTTGGCTTGGCAACAGTGAGGCGCCTTGTAGAGATGTAGAAGCAGAAGGTATGAAGGTGCATTCATCTCAGGACAGTGGACAGAGCCCCGTCGATAGCCTCCACCTCTGGCATGGTGCCATTATGAAGGATCTGAAGGAAGTTCTAAAATGTCTGTTCCAACTCAAGAGCTGCACTTCAACAGCTCTTTCTAATCTTGATTCCTTGGTTGTCCAAATAAGAAAGGCATTGGAGAAATTCTTTCGTCCTGTGTTCAATCAATATTCCGACGCATACCTAATCTCCTCCGACCAGGCATTTCTTAGTGATAGTCATATTGAAGCCTTACAACGGTTGCTGCAGCATGGTGCCCACGACACTATACCTTTGAGCAACTTTTTAGAAAAATTGTGCTGGGACATGGAGTCGTTTGTTGTCCGAGTTAGCAAACAGTTCACGTTTCAAGAAACGAAGGTGCTTCCAGTGATTAGAAAGAGCTGCAGCCATAAAACACAGCAACAGCTTCTGTATATGAGCCTCCGCACCTTGCCACTTGGGCTCTTGAAGTGTATTGTTAGTTGGTTTTCAACTCACTTATCTGAGGAAGAAATGAGATCTGTACTTCACACCAAATCGAAGGGAGATCTTCGGGTCAACAATGCACTTGTTGCCCTCTTACATGAGTGGTTACGAATTGGCTACTCGGGCAAAACTTCGGTCGAACAATTTGGACAAGAATTGCAGAAAATTTTTCAAACCAGAAGCTATTTGTTGCATGGACAGGTGGATCAAATGAAGGGAGTTGTTGGAACTTCATCCTTGAGCTCAAATGTTCAATCTCATAAGGACTCAAACTCTGAGGAAATTGGATTACTTTCGAACAACAAGAACAAGGGTTTCATGTCACATTCTTCGCCTGATGGTTCTTGCACTGCTTCAATGTATGGAACATCTTATTCTAGTGGAATCAATCTGCAGATACATTTTCCAGGAACAGTGAAGGTGCCATGTCCTTACACTAAACATCTTTATGAGGAACGCCCACATTCTGCTTTTAATCAGCCAAAACCAATAGACCTCATTTTCTTCTTCCACAAAGCTCTCAAGAAAGAACTGGATTACTTTGTTCTTGGTTCGGCTAAGATGGTTGAAAATGTTGGGATCTTGACAGAGTTTATCAGGCGGTTCCAATTGGTCAAATATTTATATCAAATCCATACGGATGCTGAGGACCAGATTGCTTTTCCAGCATTGGAGAAGAAGGGAAAGTTCCAAAATATTAGCTACTCCTACTCCATTGATCATAAACTTGAAGTACACCAATTCAGTACAATATCCCTCATTCTTAATGAAATGTCTGAATTGCACGCTTCGATTTTTTATGGCAATACTGATAGGAAAATGTTTGGTCACCGGCAGCTCTGTCTGGAACTCCATGATATGTGCAAATCGCTGCACAAGTCGCTCTCTGACCATGTTGATCGTGAAGAAATTGAGCTTTGGCCCTTGTTCAGAGAATTCTTCTCAATCGAAGAGCAAGAAAAGCTCATTGGAGCAATATTTGGCAGAACAAAAGCTGAAATATTGCAAGATATGATACCTTGGCAAATGGCATATTTAACACCTTCTGATCAACATGACATGATGTCTATGTTCCACAAGGTAACAAGGAATACAATGTTCAATGAATGGTTAAGAGAGTGGTGGGAAGGTTATGACCATGAGAGGGTGACAGCTGAGGTGACGACTACTACTCCCTCACTGACTTCAGATCCCTTGGAAATCATCTCAAAATATCTATCCACGGAAGTAACTGATGTATGTGAAGGAAATGTTTTTGGAAAACCCATCACCTCAGAACAGAATGAAGGTCAATGGCATGCAACCGATGTCGAGAAGGCGGTAATATTCAACTTGAATGATGAAACAAAAGATTTTGATGGCAGCCAACGCAACAAAACATTTGAAGAATGCACAAAACTTGTTTCTCATGGGGATGTTGATAGGGATGCTGATGTTATCACAGAACATACGATCGAATCAGAACGACCTGAAGAACATGAAAAATCAATCCAACATGACCACCTTCTTACAATTAGTCAAGAAGATCTGGAAGCAGCAATAAGAAGGGTCTCGAGAGACTCATCCTTAGACTCCAAAACTAAATCCTATATGATACAGAATTTGCTAATGAGGTTGCCTATTGGCAAGACATGTTCAACTGTCTCTTGTGGTAATTTGTCAATGGGAAAATATTTCTGCAAGATCTGCAAACTATTTGACGATTCTAGAGATATCTACCATTGTCCATACTGCAACCTGTGCCGAGTGGGAAAGGGATTGGGGATTGACTACTTCCATTGCATGAACTGCAATGCCTGCATGTCTCGTGCACTCTCAGTTCATGTATGCAGAGAGAAGTGCCTTGAAGACAACTGCCCTATTTGCCACGAATACATCTTCACTTCCACCCTTCCAGTCAAGTCCCTCCCATGTGGCCATTTGATGCATTCAGCATGTTTTCAGGAATACACCTACACACATTATACCTGCCCTATCTGTAGCAAGTCACTGGGAGACATGCAGGTGTACTTTGAGATGCTGGATGCATTGTTGGCCGAAGAGAAAATTCCAGATGAGTATTCTGGGAAAACTCAGGTCATACTGTGCAATGACTGTGAGAAGCGCGGAATGGCAGCATTCCACTGGTTGTACCATAAATGTCCCTGCTGCGGTTCATATAATACTAGGGTATTGTAA 3477 43.46 MDGATAASLDRSSHANQYHETPETPEAPEDFYSDSGLSHLPLAEAPVLVLIKFHTALRSELADLRRVTLAAAESGCYGRKFVSELIRRVEFLKLAYKYHCAAEDEVVFPALDVHTKNVISTYSLEHESLDGLFTSISEHCEEINAENKDISKPFQELVFCLGTIQTTICQHMIKEEQQVFPLLIKQFSAREQASLVWQFICSVPMILLEELLPWMMSFLPSAQQSEVVICLRDVVPNEKLLQEVIMSWLGNSEAPCRDVEAEGMKVHSSQDSGQSPVDSLHLWHGAIMKDLKEVLKCLFQLKSCTSTALSNLDSLVVQIRKALEKFFRPVFNQYSDAYLISSDQAFLSDSHIEALQRLLQHGAHDTIPLSNFLEKLCWDMESFVVRVSKQFTFQETKVLPVIRKSCSHKTQQQLLYMSLRTLPLGLLKCIVSWFSTHLSEEEMRSVLHTKSKGDLRVNNALVALLHEWLRIGYSGKTSVEQFGQELQKIFQTRSYLLHGQVDQMKGVVGTSSLSSNVQSHKDSNSEEIGLLSNNKNKGFMSHSSPDGSCTASMYGTSYSSGINLQIHFPGTVKVPCPYTKHLYEERPHSAFNQPKPIDLIFFFHKALKKELDYFVLGSAKMVENVGILTEFIRRFQLVKYLYQIHTDAEDQIAFPALEKKGKFQNISYSYSIDHKLEVHQFSTISLILNEMSELHASIFYGNTDRKMFGHRQLCLELHDMCKSLHKSLSDHVDREEIELWPLFREFFSIEEQEKLIGAIFGRTKAEILQDMIPWQMAYLTPSDQHDMMSMFHKVTRNTMFNEWLREWWEGYDHERVTAEVTTTTPSLTSDPLEIISKYLSTEVTDVCEGNVFGKPITSEQNEGQWHATDVEKAVIFNLNDETKDFDGSQRNKTFEECTKLVSHGDVDRDADVITEHTIESERPEEHEKSIQHDHLLTISQEDLEAAIRRVSRDSSLDSKTKSYMIQNLLMRLPIGKTCSTVSCGNLSMGKYFCKICKLFDDSRDIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRALSVHVCREKCLEDNCPICHEYIFTSTLPVKSLPCGHLMHSACFQEYTYTHYTCPICSKSLGDMQVYFEMLDALLAEEKIPDEYSGKTQVILCNDCEKRGMAAFHWLYHKCPCCGSYNTRVL 1158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 767033 773072 + Carg10393-RA Car10g00161 155063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00161 1158 Pfam Hemerythrin HHE cation binding domain 50 183 IPR012312 -
Car10g00161 1158 ProSiteProfiles Zinc finger CTCHY-type profile. 988 1051 IPR017921 -
Car10g00161 1158 Pfam Ring finger domain 1050 1093 IPR001841 -
Car10g00161 1158 Pfam Zinc-ribbon 1099 1156 IPR039512 -
Car10g00161 1158 MobiDBLite consensus disorder prediction 1 31 - -
Car10g00161 1158 ProSiteProfiles Zinc finger RING-type profile. 1052 1094 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00161 K16276 K16276, BTS; zinc finger protein-like protein - csv:101212459 1769.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00161 Car-Chr10:767033 Car11g00258 Car-Chr11:1423895 1.07E-14 dispersed
Car11g00259 Car-Chr11:1431845 Car10g00161 Car-Chr10:767033 5.78E-11 dispersed
Car10g00161 Car-Chr10:767033 Car04g01550 Car-Chr4:9003448 9.32E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g484 . . . . . . . . . . Cma10g00172 . Car10g00161 . . . . . . . . . . . Cla06g01615 Cam06g1794 Cec06g1843 Cco06g1849 Clacu06g1753 Cmu06g1697 Cre06g2514 . . . . . . . . . Blo15g00295 . . . . . . . Cmo10g00185 . . . . . . Cpe18g00697 . . . . . . . . . . . . . . Lsi06g01496 Csa01g00206 Chy02g02353 Cme02g01912
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00161 Car_Chr10 FPKM 38.334198 39.576954 19.716234 19.378948 25.596039 26.52956 26.855898 32.343369 30.166906 29.68469