Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00162 ATGAATGACATGGGATTCTGTTGTGAGCTCATGCAAGTCACTGGTCATCCAACTCACACATTCCTTGGTCGAAATAGGTTCTTGATGGGGCGCAAGAAGAAAAACATTGATCCGCGTTCTAAACAATCTCCGTCGGTTCGTGGAGTCGCCGTTGATGCTTCGAGTTTACCAAACGCCGCCGACAAGAGTTCAATACCTGATAAGGCAAGTAGTAACAACCAAAGTAGGATCGAGTCGGTGCCTGTCAATGAATCGGATGGCTTCTCTTATTCCACAATTAAACTCGAATGCGAGCGGGCTCTTAACGTGCTTCGGCGCGGGAACCACTCTAAGGCACTTAGGCTTATGAAGGAGTTGAACTCCAAGATTAATAACTCTGTTCACTCTGCATTGATTCATCGGGTTCAAGGTACTATTTGTGTCAAACTAGCATCGGTTATTGAGGACGTGAATACGAAGCAGCGGCATTTGAAGAATGCGATTGAGTCTGCTCGTAAAGCAGTCGAGCTCTCACCAAACTCGATTGAGTTTTCCCATTTTTATGCAAATTTGCTTTACGAGGGTGCAAATGATGCTAAGGAGTACGAGGAGGTGGTGCAAGAGTGTGAGCGGGCCCTTGGCATTGAAAATCCAATCGATCCCGCTAAAGAAAGCTTGCAGGATGAAAAGGATCAGAAAATACCTACTGCAGAAGCGCGAATTACACACGTTCAGACTGAATTGAGGCATTTAGTTCAAAAATCAAACATATACTCGATATCATCTTGGATGAAGAATTTGGGTAATGGGGAGGAGAAATTTAGGTTGATTCCGATTAGAAAAGTGACAGAGGACCCAATGGAGGCAACGTTGGTTCAGGCTAAGAGGGCAAATGAAATCAAGAAGGCAACGAAAACGCCTGAGGAGCGAAGGAAGGAGATTGAAGTCCGTGTTGCTGCTGCAAGGCTGTTGCAACAGAAGTTTGAGTCGCCTCAAATGCAAAACGAAGGAGGTAAAGCTGATCGGACCCTGGATTCATCTTCAGGGTCTAGTACAAAAGTTGGTGAGCGGCGGAAACACGCCAATGTGCGGAAACATGGCTCTTCACGTGAAAGTAGGGATTGGGTTTATTCTTTTTGGAATTCCATGAGTACAGAATCAAAGAAAGAGTTGCTTAAGATCAAGATAAGTGATCTTAAGACTCATTTTAGTTCTTCAAAGGATACCTTGGCAAATGAAATTATTTCAGAAGCTGTGTCCTTTTATGATGCCAATAAAACATGGAATTTTTTGGTGTGTTGCAAATGTGATGAGAAATTTGTGTATCCGGAATCCCATATGCATCATGTGCTTCAAGAGCACATGGGTAACCTTTTGCCGAAAATGCAATCTATCATGCCACAGAATGTTGACAATGATTGGAGTCAAATGCTTCTTAATTGCTCTTGGAAACCATTTGATGTTTCAGCTGCAGCTAAAATACTCATAGGTCAAACAAAATGCAATGACTCGGAGTTGGTTAAGGATATTGGCTTACAGCATCACTCAGAATGTGAAGAGTCTCTCAAAGATGCATGTGGTTCATCTCCAGAGAAGCATAATCATGGGCATGGTTTAAATGAATTAAAGCTTTATGAAAAAATTAGCAACAGCGGATTTGCATTATCTGATAGTTTTCCAGTATCTGATGACTCTGAGCGAACAAGGCTTCTTGAAAAAATTCATGCGGTATTTGAGTTACTTATTGGACATAAATGCCTTGCTGCAAGCCATCTAAACAAGGTGATACAATTTGCAATGGATGAGTTACAGGGCATTGTTTCTGGATCTCATTTTCTAAAGCGGGGTCTGGACCAAACACCTCTATGTATTTGCTTTCTGGGTGCTTCTCAGCTTGGAAAAATCCTCAAGTTCTTGCAAGAATTATCTCAGTCTTGTGGTATTGGTAGATACTCTGATAAAAGTACTGGTCAAGTTGAAGATCCAGAGAGTGATAAACAAGCTGTTGATGTCAAAGAGAAAGTTGTTCTCAGTGGAGATGCGTCACTTCTCCTCCTAAACGAGTGTTTTCTGTCGTCTGATATCCCTCATGCCAATGATCAGGTTGCAGCCACAGATCATATGCCTGCTGCAACTGTTAAAGATGCTACTGCAAATGAGGTTCTTTCTGATGTCGATTCTTTCCTATCTTGGATATACGCAGATCCCTCTAATGGGGAACAGGTAGCATCATGGACAAAAACAAAGGAAGAAAAGACAAAACAACAATTGGAAATTTTTCAAATGCTTGAGAAGGAATTTTACCTTCTGCAGAACCTTTGTGAGAGAAAATGTGAGCATTTGAACTATGAGGAAGCGTTGCAGTCAGTAGAGGATCTCTTCTTTGAGGAGAGCAAGAAGGAGGAGGCTACGGCTGAATTTATCCCCAAGAGTTATGTGTCAGTTCTGAGGAAGCGAAGAGAGGAGCTTCTTGAGACTGAAAATAATGTGATGTATATCGGCAGTAGGTTTGAGTTAGATGTTGTAACTAATATTTTGAAAGAAGCTGAAGCTCTGAAGGTTAATCAATTTGGATATGAGGAAACTGTTGCCAATGTGCCTTCTCAGTCATGTGATCTGGAATCCGGTGAAGATGAAAATTGGAGGGCTAAGGGTTATTTGCATCAAGTTGATACTTGTATAGAAATTGCAATAAAGAGACAGAAAGAACAATTATCTATTGAGGTTAGCAAAATTGATGCACGTATCATGCGGAATGTTTCTGGAATGCAACAGATGGAACTTAAGCTCGAGCCTGTTTCTGCACATGATTATCAATCAATATTGTTGCCTCTTGTGAACTCATACTTGAGGGCATATTTAGAAGATTTGGCTGAAAAAGATGCTACGAAGAAGTCTGATGCTGCAAGAGAGGCATTTTTAGCTGAACTGGCACTGGATTCAGAAAAAGGTATCAAAGGAGGAAGTGATAATTCGAGACATGCACATGAAAAGCCAAAGGAAAAGAAAAGGAGCAAGGAGTTTAGGAAATCCAAGGACTCTAAGGTGGTCAGTGGTCCTGAGCAGAATGTGCTTCATGATGGGGCTGTCGATGGAGTTCCCGTTCAAGTTTCACCTGATGGTGATGTGGCAAAGGTAGACGTTGCTGCTTTTGAGAACTCTGATGCTTTAAGACTACAGGAGGAAGAGCTTAGACGCAAAAGTGAGCTGGAAGCAGATGAAAGAAGGCTAGAAGAGGCTCTGGAGTATCAAAGACGGGTTGAGAATGAGGCTAAACAAAAGCTTCTGGCTGAACTACAAAAGAAATCTGCCCAGACAAATCTAGAGGACAAAGTTGCTCTGGCAGAACATGATAATCCCATTGAACTCGTCCCCAGTGTTGAGGGTGCTGAAGAGCATTTTAAACCCTCTGTTGTGGATCAATTGGCAGAAAGTGAATCGATTCCCGGCTTGTCTAGGAATTTTCCTGCAATGCCAAATGCTGTTACAGGTTCATACAATGCAGGAATTATAGAGAATACCCTGCCGCCTTCTGATAGGAAGAAGGGGAGGAAAGGTAGACGACACAAGGTTGCAATCAAACGAGTTGATGGAAATCAGCCTTCACAATCTTATAATGATAATGTAGCCTTTGACAACCAATTGAATGAGCAAGTCAGAGATCATGACAATCTCGTAGTAGATAGTGTTAATCCACTCTCTGAAGAAAATGGTACAAAGACTTTGGGACAACAACATGCGGAGGATGATGAGGAAAGATTTCAAGCTGACCTTAAGAAGGCTGTACGCCAGAGCCTTGATGCATTTCAAGAACAGCAGGAATTGCCCTTGATTACAAGTTCCAGTACACCATCGATCAGCTGTGGTGAAGTAGATGGTAATGATCTTCCATCAAATGAACTCAACGTAGAGAATGTGCAGGAAGCAGATGTATTTGGTACAGGACTTAAAAATGAAGTTGGTGAATATAATTGCTTTCTGAATGTGATTATTCAGTCCTTATGGCATTTAAGATGGTTTCGAGAAGAGTTCCTGAGAAGATCTACGACTGAACATGTTCATGTTGGGGATCCTTGTGTTCTTTGTGCATTATATGAAATCCTTGCTGCCTTGAGTACGGCATCTGCAGATTCTAGAAGAGAAGCAGTCGCCCCCACTTCTTTGAGAATAGCTCTGAGCAATTTTTGTCCTGATAGTAATTTCTTCCAAGAGGGCCAGATGAATGATGCCTCTGAAGTGCTAGCAGTCATTTTTGATTGCCTACACAAGTCGTCGACTCGTAGTTCGGGTGTTTCTGATACAGAATCAGTGGAAAGCAATTGCATGGGGTCGTGGGACTGTGCAAGTGACACTTGTTTGGTTCATTCCATCTTTGGTATGGACATTTTTGAACGAATGAATTGCTATAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACTTCCTTCTTTCACAATATAAATGCCCATGCCCTTCGAACAATGAAGGTTATGTGTACAGAAAGCTCCTTTGATGAACTTCTGAATGTTGTTGAAATGAATCATCAGCTAGCTTGTGATTTGGATGTTGGTGGCTGCGGAAAGCTCAATTACATTCATCGCTTTCTCTCTGCAGCACCACACGTGTTCACAACAGTCTTGGGTTGGCAGAACACTTGTGAGAGTGCTGATGACATCACAGCGACATTAGCTGCTCTGAATACTGAAGTAGATATCAGTGTTCTTTATCGGGGTCTAGATCCAAATACTACCCATAATTTAGTATCAGTGGTTTGCTATTATGGTCAACACTATCATTGTTTTGCCTACAGTCACGACAAGAAATGCTGGATAATGTACGATGATAAAACTGTTAAGGTAATTGGCGGCTGGCCTGATGTTCTTACCATGTGCGAAAAAGGACACTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4923 41.93 MNDMGFCCELMQVTGHPTHTFLGRNRFLMGRKKKNIDPRSKQSPSVRGVAVDASSLPNAADKSSIPDKASSNNQSRIESVPVNESDGFSYSTIKLECERALNVLRRGNHSKALRLMKELNSKINNSVHSALIHRVQGTICVKLASVIEDVNTKQRHLKNAIESARKAVELSPNSIEFSHFYANLLYEGANDAKEYEEVVQECERALGIENPIDPAKESLQDEKDQKIPTAEARITHVQTELRHLVQKSNIYSISSWMKNLGNGEEKFRLIPIRKVTEDPMEATLVQAKRANEIKKATKTPEERRKEIEVRVAAARLLQQKFESPQMQNEGGKADRTLDSSSGSSTKVGERRKHANVRKHGSSRESRDWVYSFWNSMSTESKKELLKIKISDLKTHFSSSKDTLANEIISEAVSFYDANKTWNFLVCCKCDEKFVYPESHMHHVLQEHMGNLLPKMQSIMPQNVDNDWSQMLLNCSWKPFDVSAAAKILIGQTKCNDSELVKDIGLQHHSECEESLKDACGSSPEKHNHGHGLNELKLYEKISNSGFALSDSFPVSDDSERTRLLEKIHAVFELLIGHKCLAASHLNKVIQFAMDELQGIVSGSHFLKRGLDQTPLCICFLGASQLGKILKFLQELSQSCGIGRYSDKSTGQVEDPESDKQAVDVKEKVVLSGDASLLLLNECFLSSDIPHANDQVAATDHMPAATVKDATANEVLSDVDSFLSWIYADPSNGEQVASWTKTKEEKTKQQLEIFQMLEKEFYLLQNLCERKCEHLNYEEALQSVEDLFFEESKKEEATAEFIPKSYVSVLRKRREELLETENNVMYIGSRFELDVVTNILKEAEALKVNQFGYEETVANVPSQSCDLESGEDENWRAKGYLHQVDTCIEIAIKRQKEQLSIEVSKIDARIMRNVSGMQQMELKLEPVSAHDYQSILLPLVNSYLRAYLEDLAEKDATKKSDAAREAFLAELALDSEKGIKGGSDNSRHAHEKPKEKKRSKEFRKSKDSKVVSGPEQNVLHDGAVDGVPVQVSPDGDVAKVDVAAFENSDALRLQEEELRRKSELEADERRLEEALEYQRRVENEAKQKLLAELQKKSAQTNLEDKVALAEHDNPIELVPSVEGAEEHFKPSVVDQLAESESIPGLSRNFPAMPNAVTGSYNAGIIENTLPPSDRKKGRKGRRHKVAIKRVDGNQPSQSYNDNVAFDNQLNEQVRDHDNLVVDSVNPLSEENGTKTLGQQHAEDDEERFQADLKKAVRQSLDAFQEQQELPLITSSSTPSISCGEVDGNDLPSNELNVENVQEADVFGTGLKNEVGEYNCFLNVIIQSLWHLRWFREEFLRRSTTEHVHVGDPCVLCALYEILAALSTASADSRREAVAPTSLRIALSNFCPDSNFFQEGQMNDASEVLAVIFDCLHKSSTRSSGVSDTESVESNCMGSWDCASDTCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINAHALRTMKVMCTESSFDELLNVVEMNHQLACDLDVGGCGKLNYIHRFLSAAPHVFTTVLGWQNTCESADDITATLAALNTEVDISVLYRGLDPNTTHNLVSVVCYYGQHYHCFAYSHDKKCWIMYDDKTVKVIGGWPDVLTMCEKGHLQPQVLFFEAVN 1640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 773351 782471 - Carg10394-RA Car10g00162 155064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00162 1640 MobiDBLite consensus disorder prediction 32 80 - -
Car10g00162 1640 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1307 1639 IPR028889 -
Car10g00162 1640 MobiDBLite consensus disorder prediction 320 360 - -
Car10g00162 1640 MobiDBLite consensus disorder prediction 977 1020 - -
Car10g00162 1640 Pfam Protein of unknown function (DUF627) 99 209 IPR006866 -
Car10g00162 1640 Coils Coil 147 167 - -
Car10g00162 1640 Coils Coil 1053 1102 - -
Car10g00162 1640 Pfam Ubiquitin carboxyl-terminal hydrolase 1308 1615 IPR001394 GO:0004843|GO:0016579
Car10g00162 1640 MobiDBLite consensus disorder prediction 57 80 - -
Car10g00162 1640 MobiDBLite consensus disorder prediction 320 344 - -
Car10g00162 1640 Pfam Protein of unknown function (DUF629) 370 889 IPR006865 -
Car10g00162 1640 ProSitePatterns Zinc finger C2H2 type domain signature. 426 447 IPR013087 -
Car10g00162 1640 MobiDBLite consensus disorder prediction 1162 1182 - -
Car10g00162 1640 MobiDBLite consensus disorder prediction 979 1009 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00162 Car11g00132 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00162 Car-Chr10:773351 Car12g00769 Car-Chr12:7403975 1.04E-06 dispersed
Car10g00162 Car-Chr10:773351 Car11g00132 Car-Chr11:745081 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00162 - - mcha:111007268 2571.58