Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00167 ATGGGTTTCTTCATTTGTGTCTTCTCCATGGTTGTAGCAGCAACCCTTTTAAGCCACTGCTCTGTTTCTCTCACTGAAGATGGTTTAACATTGTTGGAAATCAAAAGTGGTTTAAATGACACCAAGAACGCTCTCAGTAACTGGAGCCCTTCAGATGAATCTCCCTGCAAATGGACGGGTATCTCTTGCCATCCCCAGGACTCTCGTGTCAGCTCAATTAATCTACCATACATGCAACTAGGAGGGATTATATCTCCCAGCATTGGTAAACTTAGCAGATTGCAAAGACTGGCTCTCCACCAAAACGGCTTACATGGGTATATCCCCAATGAACTTGCTAATTGTTCTGAACTTAGAGCACTGTACCTGAGGGCTAATTATCTTGAAGGTGGCATTCCATCAAATATTGGAAACCTTTCTTACCTTGCCATACTGAAACCTTTTACCTCTGCCACTCAGTTTTTATCACTGGTATTTAACTGTAGGGATCTATCAAGCAATTCCTTTAAGGGAAGCATACCATCATCAATTGGTCGTCTCACACACTTGCGCAATCTGAATTTATCTACCAACTCTTTCTTTGGAGAAATCCCAGATATTGGAGTTCTTAGCACCTTTGGGAATGACTCGAAGAGGTTTCCACACCCTTATAAGGAACGCTCTGTTCCTCTCTCCAACCGACGTGGGATCTCACAATCCACCCCCTTGGGGACCCAGCGCCCTCGCTGGTACACCGCCCGGTTCCTTGACAATCAAGGTCTTTGTGGCCGGCAAGTGAACAAGCCCTGCCGGACCTCACTCGGATTTCCTGCTGTCTTACCACATGCTGAAATTCCTGCAAAACGATCCTCTCATTACTTGAAGGGACTGTTGATTGGTGCAATATCGACAGCGGGGTTCGTGTTGGTCGTACTTATTGTGTTCATGTGGACTCGTTTGCTGTCAAAGAAAGAACGAACTGCAAAGAGTTACATGGAAGTTAAGAAGCAAAGGAACTACGAACCAAGTGAGAAGCTTATTACATTCCATGGCAATCTTCCATATCCAACATGTGAGATCATAGAGAAGCTGGAGGGCCTTAATGAAACAAATGTTATTGGCTCAGGCGGGTTAGGCACTGTGTATCGGATGGTCATGAATGATCGTGGAGCATTTGCTGTAAAGAAAATTGATAGGACTCAGGATGGTTCAGAGCAAGTAGTTGAAAGAGAATTGGAGATATTGGGAAGCATTAAACACATAAACATAGTGAAATTGCGTGGCTATTGCAGGCTTCCTTCTTCAAAGCTTCTGATATATGATTATCTGACAGAGGGTAGCTTGGATGATTTCTTGCACGAACATGGAGCAGGAAAGTGTTTGGATTGGAGTGCTCGGTTAAACATAGCGCTGGGCACCGCTCGAGGACTGGCATACTTGCACCATGATTGCTGTCCAAAGATTGTGCACTGCAACATAAAATCCAGCAACATTCTTCTTGACGAGAACTTAGAGGCGCACGTAGCTGACTTTGGTCTTGCAAAGCTTTCAGTTGATGGGGATTCCCATATCACAACAGTTGTTGCTGGCACATTTGGTTATCTGGCTCCAGAATACTTGCAAAGTGGGATAGGAACTGAGAACTCTGATGTTTATAGCTTTGGAGTGCTGTTGCTGGAGCTTGTAACAGGGAAGAGACCAAGTGATGCATTTTTCTCAAAGAGGGGCCTAAATGTTGTTGGTTGGTTGAACACCCTGAGAGGAGAAGACCAATTGGAGAACATAGTGGATAATAGGTGCAAGAATGCAGATGTGGAAACATTAGAAGCGATTCTCGAAATAGCGGCGAGGTGCACTAATGGCAACCCGGCTATGCGGCCTACAATGAACCAAGTACTGCACCTGCTAGAGCGAGAGGTTATGTCGCCCTGCCCGAGCGATTACTCCGAGTCTCACTCGGATTATTCATGA 1950 45.18 MGFFICVFSMVVAATLLSHCSVSLTEDGLTLLEIKSGLNDTKNALSNWSPSDESPCKWTGISCHPQDSRVSSINLPYMQLGGIISPSIGKLSRLQRLALHQNGLHGYIPNELANCSELRALYLRANYLEGGIPSNIGNLSYLAILKPFTSATQFLSLVFNCRDLSSNSFKGSIPSSIGRLTHLRNLNLSTNSFFGEIPDIGVLSTFGNDSKRFPHPYKERSVPLSNRRGISQSTPLGTQRPRWYTARFLDNQGLCGRQVNKPCRTSLGFPAVLPHAEIPAKRSSHYLKGLLIGAISTAGFVLVVLIVFMWTRLLSKKERTAKSYMEVKKQRNYEPSEKLITFHGNLPYPTCEIIEKLEGLNETNVIGSGGLGTVYRMVMNDRGAFAVKKIDRTQDGSEQVVERELEILGSIKHINIVKLRGYCRLPSSKLLIYDYLTEGSLDDFLHEHGAGKCLDWSARLNIALGTARGLAYLHHDCCPKIVHCNIKSSNILLDENLEAHVADFGLAKLSVDGDSHITTVVAGTFGYLAPEYLQSGIGTENSDVYSFGVLLLELVTGKRPSDAFFSKRGLNVVGWLNTLRGEDQLENIVDNRCKNADVETLEAILEIAARCTNGNPAMRPTMNQVLHLLEREVMSPCPSDYSESHSDYS 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 808712 812628 + Carg10399-RA Car10g00167 155069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00167 649 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Car10g00167 649 ProSiteProfiles Protein kinase domain profile. 360 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car10g00167 649 Pfam Protein kinase domain 362 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00167 - - - csv:101217728 1033.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00167 Car18g00121 CCT
Car10g00167 Car11g00135 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00167 Car-Chr10:808712 Car07g00150 Car-Chr7:889423 1.47E-93 dispersed
Car10g00167 Car-Chr10:808712 Car11g00135 Car-Chr11:764403 0 wgd
Car10g00167 Car-Chr10:808712 Car18g00121 Car-Chr18:643503 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g494 . . . Bda15g00592 . . . . . Cmo18g00100 Cma10g00179 Cma11g00165 Car10g00167 Car11g00135 . . Cpe04g01517 Bhi02g00353 . . . . . . Cla06g01608 . . . . . . . . Cone13ag0089 Cone19ag0092 Lsi02g00318 Csa01g00795 Chy12g01321 Cme12g01746 Blo13g00023 . . . . . . Bma08g00212 . Cmo10g00196 Cmo11g00145 . Cma18g00130 . Car18g00121 Cpe09g01063 . Bhi08g01420 . . . . . . Cla01g01420 . . . . . . Lsi06g01488 Csa01g00213 Chy02g02519 Cme02g01906
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002646 1 2 0 1 0 0 3 0 0 2 1 1 3 2 0 3 1 0 2 1 2 0 0 0 0 2 0 0 0 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89117 PF00069 Pkinase 7.60E-46 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00167 Car_Chr10 FPKM 7.179181 5.780001 5.680459 5.498822 8.766754 9.423497 10.644046 7.174687 6.675353 6.127798