Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00168 ATGTCGCAGTCCACGTCCAGGCCGCTCAAACTTGAAGGCAAAGTAGCTATTGTCACCGGCGGAGCAAGCGGCATCGGCGAGTCCACCGTACGTCTGTTCGCCGACAACGGCGTCAAAGTAGTCGTAATCGCCGATATCCAAGACGACCGAGGACGCCAAGTTGCCGAATCGATCGGCAGCCAAAGGTGTAGCTACATCCGCTGCGACGTAACGGACGAAAATCAAGTGCAATCAATGGTGGAATCAACGGTGAAAAAGTACGGAAAATTGGACGTGATGTTCAGCAACGCAGGAGTATTAAGCAGCCAAGACCAAACCATCCTGGACCTGGATCTCTCAGCCTCAGACAAACTGTTCGAGGTGAACGTGAAGGGGATGGCGGCGTGCGTGAAGCACGCGGCTAGGGCGATGGTTGAAGGGGGAGTAAGAGGGAGCATCGTGTGCACGGGGAGTGTGGCGGCAGCGAACGGGAGTAGACGGAGGACGGACTACTGTATGTCGAAGCACGCAGTGTTAGGGTTGGTGCGATCGGCGAGCGTGCAGCTTGGAGGGAAGGGAATAAGGGTGAATTGCGTGTCGCCGAGTGGGGTAGCGACGGCGGCGACATGTAGGTCGCTGGGAATGGGAATGGAGGACGTCGAGAAAGCGTACAGAGGAATGTCGAGGCTGGAAGGTGTAGCGTTGAAGGCGAGTCATGTCGCTGACGCTGTGCTCTTCCTCGCTTCCGATGACTCAGCCTTTGTCACGGGCCATGACCTTGTGGTCGACGGTAGTTTCGTCCCTGTCCTTTAA 792 56.57 MSQSTSRPLKLEGKVAIVTGGASGIGESTVRLFADNGVKVVVIADIQDDRGRQVAESIGSQRCSYIRCDVTDENQVQSMVESTVKKYGKLDVMFSNAGVLSSQDQTILDLDLSASDKLFEVNVKGMAACVKHAARAMVEGGVRGSIVCTGSVAAANGSRRRTDYCMSKHAVLGLVRSASVQLGGKGIRVNCVSPSGVATAATCRSLGMGMEDVEKAYRGMSRLEGVALKASHVADAVLFLASDDSAFVTGHDLVVDGSFVPVL 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 813967 814758 + Carg10400-RA Car10g00168 155070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00168 263 Pfam Enoyl-(Acyl carrier protein) reductase 20 257 - -
Car10g00168 263 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 151 179 IPR020904 GO:0016491
Car10g00168 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Car10g00168 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Car10g00168 263 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Car10g00168 263 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 197 - -
Car10g00168 263 Gene3D - 2 261 - -
Car10g00168 263 PRINTS Glucose/ribitol dehydrogenase family signature 15 32 IPR002347 -
Car10g00168 263 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Car10g00168 263 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Car10g00168 263 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Car10g00168 263 PRINTS Glucose/ribitol dehydrogenase family signature 185 202 IPR002347 -
Car10g00168 263 PRINTS Glucose/ribitol dehydrogenase family signature 223 243 IPR002347 -
Car10g00168 263 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 258 IPR036291 -
Car10g00168 263 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3 259 - -
Car10g00168 263 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B-LIKE 3 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00168 - - - cmax:111484820 474.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00168 Car-Chr10:813967 Car17g00956 Car-Chr17:7766653 2.41E-91 dispersed
Car18g00493 Car-Chr18:3535288 Car10g00168 Car-Chr10:813967 2.43E-09 dispersed
Car10g00168 Car-Chr10:813967 Car12g00055 Car-Chr12:232044 9.97E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g496 . . . . . . . Bma12g01007 . . . . Car10g00168 . . . . . . . . . . . . . . . . . . . . Cone13ag0088 Cone19ag0091 . . . . . Blo15g00305 . . . . . . Sed08g2640 Cmo10g00197 . . . . . . . Bhi08g01181 Tan05g2690 Cmetu03g1526 . Hepe07g1730 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014675 1 0 2 1 1 0 1 0 0 0 0 0 0 0 0 1 0 2 0 0 0 4 0 1 1 0 0 0 1 3 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00168 Car_Chr10 FPKM 0.0 0.0 0.167385 0.0 0.0 0.0 0.0 1.447672 1.319727 0.992186