Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00169 ATGGAGAAGGCCATTCTGCGAACACTCAAATGGGAAGGGATTATTACAGAGCATTCTTGGTTCCTCCGGCCATTGCGCCGTAACCCACTCTGTTTTTTAATGGATGAGCAGCACGATGAAGAAAGAATCAAAAGAACGAAAGCTGAAATGAGGGAAGTAAGGGAAGAAAACGAGAGGCTGAAGAAACGTTTGGATGAAACAATGAAGAATTACGAGACACTGAAAAGGCAGGTCCATCAAATGGGTCAAATCAGAGCAGCAAAAAAGTCAACACAAACAAGTGCAATTGGCATACGTAACGATGAGGTTGAAGAAATGGACCAAATGGTTTCACTCACATTAGGAAGAAGATTATTCAGCAACATTTCCTCACCAACAAAATCAGATCCTCAAAACGTGGGCTTTCTGGGTTTGCCGGCGCCCCCCACCGGAGAAGATGAAGTTTCTCGTCAGAATCCTCCCAAGAAACCTAGGGTTTCTGTGAGAGCCCGGTGTGATGCCCCGTTGGTGCAGATGAACGATGGATGCCAATGGAGGAAATACGGGCAGAAGACAGCAAAAGGAAATCCTTGCCCTAGAGCTTATTATCGTTGCACAGGTGCACCCTCATGTCCCGTTAGGAAACAGGTGCAAAGGAGTGTTGATGATATTTCCATACTAATCACCACCTATGAAGGAACTCACAACCATCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCGGCTGCTGCCTCGATGCTCCTCTCGGGCCCTTCTTCATTCGCCACCGCTGCGGCGGATCTCCATGGATTGAACTCGTATCTCTCTAACAACACAAATTCAAAGGGATTCTACTTGCCAAACTCTTCAATGCTATCTTCTTCTCTCAACCATCCCACAATCACTTTAGACCTCACTTCAAACTCTCCCTCAGCTAATTATCCCCCAAAGTTTCCTCTTGATTTTGGCTCTTCTCAATACAGCTTCATGCCTTGGAACAATAGTAACAGTGGCTATGGCTATGGCAATGCCAGTCAAGCCGGTCATCAACAATTTTCCAAATCTTCAACTCCGCCCCCGCCATTGTCGTCACCTCTACCTGACACGATTGCGGCAGCAACTAAGGTGATTACGTCCGACCCGAATTTCCATTCGGCATTGGCAGCTGCCCTGAGCTCGATCATCGGCGGCGGGAATGGGAGCAAGACAGCTCCTCCAATGGCTAGCTATGTTGAAGAACCTCAGGGAAATGTGTGTGCATCAAGTTTAAGCTCTCAACAAGGTAGTATGGGGTTTGAGGCAGCTAAATCATTATCATGCTCCACCTCCAAGAGTCCTTCCTCATCTCCTGGGGATAGTAGAGAAAATGGCAAGTGA 1365 47.47 MEKAILRTLKWEGIITEHSWFLRPLRRNPLCFLMDEQHDEERIKRTKAEMREVREENERLKKRLDETMKNYETLKRQVHQMGQIRAAKKSTQTSAIGIRNDEVEEMDQMVSLTLGRRLFSNISSPTKSDPQNVGFLGLPAPPTGEDEVSRQNPPKKPRVSVRARCDAPLVQMNDGCQWRKYGQKTAKGNPCPRAYYRCTGAPSCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGPSSFATAAADLHGLNSYLSNNTNSKGFYLPNSSMLSSSLNHPTITLDLTSNSPSANYPPKFPLDFGSSQYSFMPWNNSNSGYGYGNASQAGHQQFSKSSTPPPPLSSPLPDTIAAATKVITSDPNFHSALAAALSSIIGGGNGSKTAPPMASYVEEPQGNVCASSLSSQQGSMGFEAAKSLSCSTSKSPSSSPGDSRENGK 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 815310 817434 + Carg10401-RA Car10g00169 155071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00169 454 MobiDBLite consensus disorder prediction 122 160 - -
Car10g00169 454 Pfam WRKY DNA -binding domain 173 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car10g00169 454 ProSiteProfiles WRKY domain profile. 167 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car10g00169 454 MobiDBLite consensus disorder prediction 429 454 - -
Car10g00169 454 Coils Coil 36 77 - -
Car10g00169 454 MobiDBLite consensus disorder prediction 339 353 - -
Car10g00169 454 MobiDBLite consensus disorder prediction 339 363 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00169 Car13g00772 CCT
Car10g00169 Car13g00772 ECH
Car10g00169 Car11g00139 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00275 Car-Chr7:1454524 Car10g00169 Car-Chr10:815310 2.88E-50 dispersed
Car10g00169 Car-Chr10:815310 Car11g01502 Car-Chr11:12089406 9.18E-61 dispersed
Car14g00953 Car-Chr14:5766352 Car10g00169 Car-Chr10:815310 3.93E-27 dispersed
Car10g00169 Car-Chr10:815310 Car11g00139 Car-Chr11:785975 1.89E-127 wgd
Car10g00169 Car-Chr10:815310 Car13g00772 Car-Chr13:8627371 2.18E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4139 PF03106 WRKY 4.90E-24 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00169 - - cmax:111484813 675.241