Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00176 ATGGAAGGAGGTGATGACCTCCACCACCATCACCACCACCACCGTCCCACCTTCCCATTTCAATTGCTCGAGAAAAAAGACGACGACGCTGCATCTTGCTCCACTTCTCCTTACCCTTCTCTTGCAATCTCTCCCGACCCCACCACCGCCGCCGCCGCCGCCACCGTCTCCGTTGCAGAGCCTTCTTCCAAGAAGCCACCAGCCAAAAGAACCTCCACGAAAGACCGTCATACGAAAGTCGATGGTCGTGGTCGACGCATCCGAATGCCAGCCCTATGTGCAGCTAGGGTATTTCAACTCACACGAGAATTGGGTCATAAGTCCGACGGCGAAACCATCGAGTGGCTCCTTCAACAAGCGGAGCCTGCCGTGATTGCCGCTACCGGAACTGGTACCATCCCGGCTAACTTCACATCCCTCAATATCTCATTACGTAGCTCCGGCTCCACCATGTCTGTTCCTTCGCAGCTTCGGTCATCTTCCTATTACAACCCTAATTTCTCCCTGCATCAACCACGCCGAACGCTCTTCCCGGGATTCGGCCTCTCATCGGAACCCTCCTCCACCGCTCTCCTCAATTTCCAGTCCACCAACATCGGTAACTCTCTACTCCAAGCCAAACCTGAACTCAGAGACAACACTACCTCTTCATTAGACCTCTCGGACGCGGCGGAGGAAATCAGCATAGGGCGGAAGAGAAGACCGTCCACAGAGCAGGAGATGTCGTCGTCGTCGTCGTCGCAGCATCAAATGGGAGGGTATCTGCTACAGTCAAGTGCAGGGTCGATCCCAGCGAGCCACGGAGGAGGTCAGGTTCCGGCGAATTTTTGGATGCTTACAAATACAAATAACCAAGTGATGGGGGGTGATCCCATATGGACGTTTCCATCGGTTAACAACAGCGGGTTGTACAGAGGGACGATGTCTAGTGGGTTACATTTCATGAACTTCCCAGCCCCAGTCGCGTTAGTGCCAGGTCAGCAATTTGGTTCCGGCGCCGGCGGAGGGAATAATAGTTCCAGTGAGGGACACTTGAACATACTCGCTGGCCTGAATCCGTATCGCTCGGTTTCCACCACCGGCATCATGGAACAACAGGGAAGTGGATCGCACTCACATCACGGCGGCGGTGGAGATGATCGCCATGATTCAACCAGCCACCACTCATAA 1170 54.53 MEGGDDLHHHHHHHRPTFPFQLLEKKDDDAASCSTSPYPSLAISPDPTTAAAAATVSVAEPSSKKPPAKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSSSYYNPNFSLHQPRRTLFPGFGLSSEPSSTALLNFQSTNIGNSLLQAKPELRDNTTSSLDLSDAAEEISIGRKRRPSTEQEMSSSSSSQHQMGGYLLQSSAGSIPASHGGGQVPANFWMLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSGAGGGNNSSSEGHLNILAGLNPYRSVSTTGIMEQQGSGSHSHHGGGGDDRHDSTSHHS 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 839601 840770 - Carg10408-RA Car10g00176 155078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00176 389 MobiDBLite consensus disorder prediction 374 389 - -
Car10g00176 389 MobiDBLite consensus disorder prediction 207 222 - -
Car10g00176 389 MobiDBLite consensus disorder prediction 29 85 - -
Car10g00176 389 MobiDBLite consensus disorder prediction 67 85 - -
Car10g00176 389 MobiDBLite consensus disorder prediction 207 251 - -
Car10g00176 389 MobiDBLite consensus disorder prediction 363 389 - -
Car10g00176 389 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Car10g00176 389 Pfam TCP family transcription factor 71 243 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00176 - - - csv:101221049 594.734
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00176 Car13g00957 CCT
Car10g00176 Car13g00957 ECH
Car10g00176 Car11g00147 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00176 Car-Chr10:839601 Car11g01298 Car-Chr11:10753075 5.58E-38 dispersed
Car17g01312 Car-Chr17:9868075 Car10g00176 Car-Chr10:839601 1.03E-37 dispersed
Car04g01863 Car-Chr4:10791537 Car10g00176 Car-Chr10:839601 4.32E-47 transposed
Car10g00176 Car-Chr10:839601 Car11g00147 Car-Chr11:831723 0 wgd
Car10g00176 Car-Chr10:839601 Car13g00957 Car-Chr13:9659431 7.41E-17 wgd
Car10g00176 Car-Chr10:839601 Car18g01068 Car-Chr18:10862749 7.07E-93 wgd
Car10g00176 Car-Chr10:839601 Car04g01690 Car-Chr4:9711586 4.24E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g537 Blo04g00768 . Bda06g00547 Bda15g00599 Bpe12g00551 . . Bma12g00998 Cmo13g01176 . Cma10g00186 . Car10g00176 Car11g00147 Sed08g0209 Cpe20g00029 . Bhi02g00330 Tan09g2130 Cmetu02g1507 . Hepe09g0125 . . Cla06g01596 Cam06g1770 Cec06g1822 Cco06g1829 Clacu06g1733 Cmu06g1677 Cre06g2493 . . . Cone19ag0075 Lsi02g00060 Csa01g00533 Chy12g01554 Cme12g02008 Blo13g00013 Blo15g00307 . Bda14g00846 Bpe07g00785 Bpe15g00605 . Bma08g00216 . Cmo10g00203 Cmo11g00159 Cma13g01122 . Car13g00957 . . Cpe18g00799 . . . . . . . Cla04g01209 Cam04g1275 Cec01g1783 Cco01g1830 Clacu04g1303 Cmu04g1279 Cre01g1570 Lsi06g01472 Csa01g00228 Chy02g02504 Cme02g01890
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4141 PF03634 TCP 2.50E-39 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00176 Car_Chr10 FPKM 54.413044 59.563805 59.176533 61.730366 47.283688 48.787342 48.015343 41.840919 41.739487 42.322128