Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00181 ATGGGCGCCACTTGGAGGCCGAAAACCGACAATTATTCTGCGTTGGATTGGAACTGCAATTTTGGATTTCCGGATAGCTTTTTTGACGTTGTTCCTTTGCTTGAGAGTTGCGCAAATAATGACTCGTTTTTCGACCCCAAGGACATAGATCCTTTTAGCAGTTTTATATCAGAAGATGGGAGCGTTGGGATTTGGAGTGAATTGGAGAGTGAAGCATTTGGGGTTGAGGAAGGAGGCGGAGAAAATGGTAATGGAGGGATGGGAAACGAGGGGACGATGATGAGGAAGGCTAAAAGAAAGTGCTGCAGAGAAACGAGCAATGGCAGTGGCAGTGCATCAACAAAAGCGTTGTCAAGAGAAGCAATATCGGAGTACTTCTACATGCCCATAACTCAGGCAGCTAAACAGCTCAATGTCGGACTCACTCTGTTGAAGAAGAGATGCAGAGAATTGGGTATAAGAAGATGGCCTCATAGGAAGCTCATGAGCCTACAGACACTAATCAAGAACGAGCTTCAGAAGGAAGATGGAGATCAGGGAGTGAATAAGTTGAGCAATGTATTGAAGATATTAGAGAATGAGAAGAAATTAATGGAGGAGAGACCAGATTTGCAGTTGGAGGACAATACAAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAAAGAAAGCTTTCAGGAACCAACAATGGCTCCCAGTATTTCTCCATTAATGGTGGAATGATTTGCAGAGATGATCAAGAACATGGGGAGGAGGAGGAGGAAGAAGATGATTTAGAAATGAAATATCTGTTGATGGGTTGCTCGTTTTCGTCGAGTATTGGCAGCCCATTGATGTAA 846 43.97 MGATWRPKTDNYSALDWNCNFGFPDSFFDVVPLLESCANNDSFFDPKDIDPFSSFISEDGSVGIWSELESEAFGVEEGGGENGNGGMGNEGTMMRKAKRKCCRETSNGSGSASTKALSREAISEYFYMPITQAAKQLNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNELQKEDGDQGVNKLSNVLKILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGTNNGSQYFSINGGMICRDDQEHGEEEEEEDDLEMKYLLMGCSFSSSIGSPLM 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 882053 883214 + Carg17963-RA Car10g00181 155083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00181 281 Coils Coil 181 201 - -
Car10g00181 281 Pfam RWP-RK domain 117 164 IPR003035 -
Car10g00181 281 ProSiteProfiles RWP-RK domain profile. 104 184 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00181 - - - cmax:111471365 270.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00181 Car-Chr10:882053 Car16g00470 Car-Chr16:2984946 1.89E-09 dispersed
Car18g01240 Car-Chr18:11849431 Car10g00181 Car-Chr10:882053 9.41E-34 transposed
Car10g00181 Car-Chr10:882053 Car11g00151 Car-Chr11:850641 9.91E-86 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g00151 CST 74 199 AtRKD Transcription Factor Family AT1G18790 69.7 8.9e-39 157.9
Car10g00181 . 98 229 AtRKD Transcription Factor Family AT1G18790 64.9 2.0e-38 156.8
Car10g00181 . 111 280 AtRKD Transcription Factor Family AT1G74480 56.1 2.2e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4143 PF02042 RWP-RK 3.60E-21 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00181 Car_Chr10 FPKM 25.666904 25.951742 18.287828 18.68854 34.797695 28.636879 35.713619 7.536217 8.296387 9.345665