Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00181 ATGGGCGCCACTTGGAGGCCGAAAACCGACAATTATTCTGCGTTGGATTGGAACTGCAATTTTGGATTTCCGGATAGCTTTTTTGACGTTGTTCCTTTGCTTGAGAGTTGCGCAAATAATGACTCGTTTTTCGACCCCAAGGACATAGATCCTTTTAGCAGTTTTATATCAGAAGATGGGAGCGTTGGGATTTGGAGTGAATTGGAGAGTGAAGCATTTGGGGTTGAGGAAGGAGGCGGAGAAAATGGTAATGGAGGGATGGGAAACGAGGGGACGATGATGAGGAAGGCTAAAAGAAAGTGCTGCAGAGAAACGAGCAATGGCAGTGGCAGTGCATCAACAAAAGCGTTGTCAAGAGAAGCAATATCGGAGTACTTCTACATGCCCATAACTCAGGCAGCTAAACAGCTCAATGTCGGACTCACTCTGTTGAAGAAGAGATGCAGAGAATTGGGTATAAGAAGATGGCCTCATAGGAAGCTCATGAGCCTACAGACACTAATCAAGAACGAGCTTCAGAAGGAAGATGGAGATCAGGGAGTGAATAAGTTGAGCAATGTATTGAAGATATTAGAGAATGAGAAGAAATTAATGGAGGAGAGACCAGATTTGCAGTTGGAGGACAATACAAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAAAGAAAGCTTTCAGGAACCAACAATGGCTCCCAGTATTTCTCCATTAATGGTGGAATGATTTGCAGAGATGATCAAGAACATGGGGAGGAGGAGGAGGAAGAAGATGATTTAGAAATGAAATATCTGTTGATGGGTTGCTCGTTTTCGTCGAGTATTGGCAGCCCATTGATGTAA 846 43.97 MGATWRPKTDNYSALDWNCNFGFPDSFFDVVPLLESCANNDSFFDPKDIDPFSSFISEDGSVGIWSELESEAFGVEEGGGENGNGGMGNEGTMMRKAKRKCCRETSNGSGSASTKALSREAISEYFYMPITQAAKQLNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNELQKEDGDQGVNKLSNVLKILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGTNNGSQYFSINGGMICRDDQEHGEEEEEEDDLEMKYLLMGCSFSSSIGSPLM 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 882053 883214 + Carg17963-RA Car10g00181 155083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00181 281 Coils Coil 181 201 - -
Car10g00181 281 Pfam RWP-RK domain 117 164 IPR003035 -
Car10g00181 281 ProSiteProfiles RWP-RK domain profile. 104 184 IPR003035 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00181 Car-Chr10:882053 Car16g00470 Car-Chr16:2984946 1.89E-09 dispersed
Car18g01240 Car-Chr18:11849431 Car10g00181 Car-Chr10:882053 9.41E-34 transposed
Car10g00181 Car-Chr10:882053 Car11g00151 Car-Chr11:850641 9.91E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4143 PF02042 RWP-RK 3.60E-21 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00181 - - cmax:111471365 270.781