Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00182 ATGACTGTGATCTTCCGGCGATGCCGTTGTTCGGCGGATCGGCATCTTCATTCTCTTCGCCTTCCTCGTTTCGCATCCACCGCTTCTCTCCTTCACTCTCCGATCTCTCTGCTTTCTTCCAAATTTCGTGAACAAAACTCCACGCTTCGCTTCGATAGAGAGCCGCTGATTTCTCTCATAAAGTCATGCACCCACAAATCACAATTGCTGCAAATCCATGCCCACATGATCCGCACTTCTTTCATTCAAGACCCCATTGTTTCCCTCCGCTTCTTGACTCGCATCGTTTCCGCGCCTTTTCGCGAATTGGGCTATTCGCGAAGATTCTTCTCTCAGCTGACGAACCCATTTGTTTCTCATTACAATACGCTGTTGAGAGCTTACTCGTTGAGCCGTTCACCTCTGGAGGGATTGTACATGTACAGAGATATGGAGAGGCGAGGTGTTCATGCTGATCCTTTGTCTTCTTCCTTTGCCGTTAAGTCGTGTATAAGAATGCTTTCATTATTTAGTGGGGTTCAGATTCACGCAAGGATCTTTAGAAATGGGCATCAATCGGATAGTCTTTTGCTCACCTCCATGATGGATTTGTATTCTCATTGTGGCAAACTTGAGGATGCATGCAAACTGTTCGATGAAATTCCTCAAAGAGATGTTGTTGCTTGGAACGTTTTGATTTCGTGTCTAACTCGCAATAAACGAACAAGGGATGCTTTGGGTTTGTTTGAGATCATGCAGAGTCCAACGTATCTCTGCAAACCTGATAAAGTTACCTGTTTACTTCTTCTCCAAGCCTGTGCGGACTTGAATGCATTGGAATTTGGCGAAAGGATTCATAGTCATATTCAACAGCACGGTTATAATACCGAGAGTAATTTGTGCAATTCGCTGATATCCATGTATTCGCGGTGTGGACGTGTGGATAAGGCGTATGAAGTGTTTGATAAAATGCCTGAGAAAAATGTTGTTTCGTGGAGTGCGATGATTTCCGGGTTATCAATGAATGGACACGGGAGAGAAGCTATTGAAGCGTTTTGGGCGATGCAAAAGAAGGGTGTTGAGCCTGATGATCATACTTTCACTGCAGTTCTTTCTGCTTGTAGCCATTGTGGGCTGGTTGATGAAGGAATGGCGTTTTTTGATCGTATGAGACAAGAGTTCATGATAGTTCCCACCGTCCATCACTATGGATGTATGGTTGATCTCTTGGGTCGTGCTGGAATGCTCGACCAAGCCTATCAGCTCGTAATGTCAATGGAGGTGAATCCAGATGCGACAATGTGGAGGACCCTTCTTGGAGCTTGCAGAATTCACGGTCATGCAAACCTTGGGGAGCGCATAATTGAGCATTTGATTGAACTCAAATCTCAAGAAGCAGGTGATTATGTGCTGTTGCTGAACATTTATTCTTCGGCTGGGAACTGGGACAAGGTAACTGAATTGAGGAAATTCATGAAGGAAAGGGGTATCTATACTACACCCGGCTGCACCACAATAGAACTGAATGGGGTGGTGCATGAGTTTGCTGTGGATGATATTTCACATCCGATGAAGGACAAGATCTACGAGCAGCTGGACGAGATCAACAAGCAGCTAAAGATTGCAGGTTATGAAGCTGAAATATCATCTGAATTACACAACTTGAAGGCAGAAGATAAGGGGTATGCGCTTTCTTATCATAGTGAGAAATTGGCCATAGCCTTTGGGATTCTTGCAACCCCGCCTGGAAGAACCATCAGAGTGGCAAACAATCTTCGTACTTGCATGGATTGTCATAACTTTGCTAAATATGTCTCAAGTGTTTATAACCGAAAAGTGGTTGTTAGGGACCGAAGTCGGTTCCATCATTTCCGAGAGGGTCGGTGTTCCTGCAACGATTATTGGTAG 1887 44.78 MTVIFRRCRCSADRHLHSLRLPRFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSHYNTLLRAYSLSRSPLEGLYMYRDMERRGVHADPLSSSFAVKSCIRMLSLFSGVQIHARIFRNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCKPDKVTCLLLLQACADLNALEFGERIHSHIQQHGYNTESNLCNSLISMYSRCGRVDKAYEVFDKMPEKNVVSWSAMISGLSMNGHGREAIEAFWAMQKKGVEPDDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIVPTVHHYGCMVDLLGRAGMLDQAYQLVMSMEVNPDATMWRTLLGACRIHGHANLGERIIEHLIELKSQEAGDYVLLLNIYSSAGNWDKVTELRKFMKERGIYTTPGCTTIELNGVVHEFAVDDISHPMKDKIYEQLDEINKQLKIAGYEAEISSELHNLKAEDKGYALSYHSEKLAIAFGILATPPGRTIRVANNLRTCMDCHNFAKYVSSVYNRKVVVRDRSRFHHFREGRCSCNDYW 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 883472 885358 + Carg17962-RA Car10g00182 155084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00182 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Car10g00182 628 Pfam DYW family of nucleic acid deaminases 536 628 IPR032867 GO:0008270
Car10g00182 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Car10g00182 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 386 IPR002885 -
Car10g00182 628 Pfam PPR repeat 295 317 IPR002885 -
Car10g00182 628 Pfam E motif 440 500 IPR046848 -
Car10g00182 628 Pfam PPR repeat family 320 368 IPR002885 -
Car10g00182 628 Pfam PPR repeat family 217 267 IPR002885 -
Car10g00182 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Car10g00182 628 Pfam PPR repeat 395 420 IPR002885 -
Car10g00182 628 Pfam PPR repeat 120 149 IPR002885 -
Car10g00182 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 320 IPR002885 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00182 Car11g00151 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02383 Car-Chr4:19089900 Car10g00182 Car-Chr10:883472 2.29E-154 dispersed
Car10g00182 Car-Chr10:883472 Car13g00046 Car-Chr13:370491 9.46E-52 dispersed
Car12g00901 Car-Chr12:8913311 Car10g00182 Car-Chr10:883472 3.07E-23 dispersed
Car10g00182 Car-Chr10:883472 Car10g00525 Car-Chr10:2633766 9.95E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00182 - - mcha:111007242 1111.67