Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00188 ATGGCGTTTCTTGGATTAGTCTTGGTGGGTCTTCTTCTATCTTTGGGATGTGATTCTGTTCATGGCAACAATGGAGGAGGAGGTTGGACTGATGCCCACGCCACGTTCTACGGTGGGGGCGACGCTGCTGGTACAATGGGAGGGGCTTGTGGGTATGGAAACCTATACAGCCAGGGATATGGGACGAACACAGCAGCTCTGAGCACAGCCCTATTCAACAATGGACTGAGCTGTGGGGCTTGCTTCGAAATCAAGTGCGTAAATGACGCAAGATGGTGTATTTCAAGCTCCATTGTGGTCACTGCCACCAACTTTTGTCCACCAAACAATGCTCTCCCCAACAACGCCGGCGGCTGGTGTAACCCTCCACAGCACCATTTCGATCTCTCCCAGCCCGTCTTCCAGCAAATCGCCCATTACAAAGCCGGCATTGTCCCAGTGGCATACAGAAGGGTTTCTTGTCAGAAGAAAGGAGGCATCAGATTCACAATCAACGGCCATTCATACTTCAATTTAGTTCTTATAACCAACGTCGGGGGAGCTGGGGATGTTCATGGAGTGTGGATTAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGCCAGAACTGGCAGAGCAACTCGTATCTGGATGGACAAAGGCTGTCGTTCAAAGTAACCACCGGCGATGGGCGGACGGTGATATCCAACGGCGTAGTGCCAGCTGGGTGGAGATTCGGTCAAACTTTTAGTGGGCTGCAGTTCCCATGA 759 51.91 MAFLGLVLVGLLLSLGCDSVHGNNGGGGWTDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDARWCISSSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAHYKAGIVPVAYRRVSCQKKGGIRFTINGHSYFNLVLITNVGGAGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLDGQRLSFKVTTGDGRTVISNGVVPAGWRFGQTFSGLQFP 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 902985 904563 - Carg17956-RA Car10g00188 155090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00188 252 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Car10g00188 252 SMART dpbb_1 64 149 IPR007112 -
Car10g00188 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Car10g00188 252 Pfam Lytic transglycolase 64 149 IPR009009 -
Car10g00188 252 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Car10g00188 252 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Car10g00188 252 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Car10g00188 252 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Car10g00188 252 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Car10g00188 252 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Car10g00188 252 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Car10g00188 252 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Car10g00188 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Car10g00188 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Car10g00188 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Car10g00188 252 Gene3D - 157 251 IPR036749 -
Car10g00188 252 PANTHER EXPANSIN-A15 8 251 IPR002963 GO:0009664
Car10g00188 252 Gene3D - 16 155 IPR036908 -
Car10g00188 252 PANTHER EXPANSIN 8 251 - -
Car10g00188 252 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
Car10g00188 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Car10g00188 252 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Car10g00188 252 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Car10g00188 252 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Car10g00188 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Car10g00188 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00188 Car11g00157 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00437 Car-Chr1:2498011 Car10g00188 Car-Chr10:902985 2.78E-134 dispersed
Car01g00733 Car-Chr1:4473173 Car10g00188 Car-Chr10:902985 2.07E-108 dispersed
Car10g00188 Car-Chr10:902985 Car15g00262 Car-Chr15:1437362 2.67E-130 dispersed
Car04g00850 Car-Chr4:4936749 Car10g00188 Car-Chr10:902985 5.86E-86 transposed
Car10g00188 Car-Chr10:902985 Car11g00157 Car-Chr11:869855 9.96E-151 wgd
Car10g00188 Car-Chr10:902985 Car18g01051 Car-Chr18:10776371 5.39E-126 wgd
Car10g00188 Car-Chr10:902985 Car04g01707 Car-Chr4:9792612 5.34E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00188 - K20628 csv:101222936 460.685